Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m17
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   1.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.2  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 485 NRCSRQFHKFHHAWNYPLCLCHPKDLR 565
           N+  R+F+ +   WN P  +CH   LR
Sbjct: 37  NKTVREFNVY---WNVPTFMCHKYGLR 60


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 174 GQIVCFARIFFNI 212
           G + CFAR+FF I
Sbjct: 5   GSLYCFARLFFII 17


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 46  QVKLCRRGKDSGFLYKGTVLGIVLDISICKRFNILSA 156
           +V++ R GK    L  G VLG +  +  CKR   ++A
Sbjct: 146 KVEVSRDGKYLSTLAPGKVLGELAILYNCKRTATITA 182


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 112 VLDISICKRFNILSAISGYVADRSFVS 192
           VL +S+CK    +S +S YV+  + V+
Sbjct: 108 VLGVSLCKIRAYVSEMSSYVSVLTIVA 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,097
Number of Sequences: 438
Number of extensions: 4957
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)