Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m16
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    54   2e-08
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    54   3e-08
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.94 
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.94 

>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = -3

Query: 736 LDRFWLDVVLLLIGENFE-NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE 560
           LD  WL  VL  IGE  +    E+ G V+N+R    ++A+WT     +   +EIG + K+
Sbjct: 127 LDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQ 186

Query: 559 QLGI--HGKIGFQVHRDTMVKHSSATKNLYTV 470
            L +     I F  H D+    S+  K   +V
Sbjct: 187 VLNLPRSETIEFSAHEDSSKSGSTRAKTRMSV 218


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
 Frame = -3

Query: 742 TDLDRFWLDVVLLLIGENFE-NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKL 566
           ++LD  WL +VL  IGE  +    E+ G V N+R    +IA+WT +   +    +IG + 
Sbjct: 150 SNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRF 209

Query: 565 KEQLGIHGK--IGFQVHRDTMVKHSSATK 485
           KE LGI  K  I +  H D+    S   K
Sbjct: 210 KEVLGISDKETIEYSAHEDSSKAGSMRAK 238


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +3

Query: 138  LPTSRVAYLTTYNYVTLHTDTRA*V*YKIRLLTFYSSRGLYHVTM*DKYDYKN*TNTTSV 317
            +P ++  +   Y Y+ L  D      +K  +  FY      H  M  + +Y+N T   S+
Sbjct: 1092 VPRNKTIFRILYEYIQLSDDHTLDDFWKTPVPIFYGEPDCIHNDMKGELNYENETEGFSI 1151

Query: 318  KYNFIL-LL*LRKFSLWDVLNIF 383
                IL LL +  + + DV  +F
Sbjct: 1152 NIREILDLLSILYYGIRDVHTLF 1174


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 551 DTRQDW-FPSTQRH-NG*A*FCDQESIHCLVLAL 456
           D  Q+W FP TQ++ N    FC+Q   H L+LAL
Sbjct: 98  DAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLAL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,093
Number of Sequences: 5004
Number of extensions: 50838
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)