Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m16
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065...    83   2e-16
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449...    76   3e-14
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857...    57   2e-08
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715...    32   0.56 
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922...    29   5.2  

>01_07_0331 +
           42804385-42804659,42806175-42806340,42806424-42806549,
           42807142-42807207,42807645-42807698,42808843-42809019,
           42809100-42809102
          Length = 288

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 40/83 (48%), Positives = 53/83 (63%)
 Frame = -3

Query: 733 DRFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 554
           D  WL  +L +IGE F+  DEICGAVV+VR K ++IAIWT +A  + A I IGK+ KE L
Sbjct: 141 DTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFL 200

Query: 553 GIHGKIGFQVHRDTMVKHSSATK 485
                IGF VH D + K+   ++
Sbjct: 201 DYKDSIGFIVHWDILSKYEDMSE 223


>10_08_0323 +
           16743358-16743566,16744536-16744704,16744834-16744959,
           16745813-16745878,16745997-16746047
          Length = 206

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 33/78 (42%), Positives = 49/78 (62%)
 Frame = -3

Query: 748 RFTDLDRFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKK 569
           R T L+  WL+ ++ LIGE F+ S+EICG V +VR + DK+A+WT  A  +   + IGKK
Sbjct: 115 RKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKK 174

Query: 568 LKEQLGIHGKIGFQVHRD 515
            KE +  + K+ +  H D
Sbjct: 175 WKEIVDYNDKMVYSFHDD 192


>03_02_0446 -
           8567436-8567567,8567649-8567768,8569837-8569914,
           8570018-8570122,8570214-8570306,8570464-8570619
          Length = 227

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = -3

Query: 730 RFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLG 551
           RFW D+VL+L+G+  + SD++CG V++VR   D +++W  +A    A + +   +K  L 
Sbjct: 139 RFWEDLVLVLVGDQLDYSDDVCGVVLSVRFNEDILSVWNRNASDHQAVMTLRDSIKRHLK 198

Query: 550 I-HGKIGFQVHRDTMVKHSSATKNLY 476
           + H  +      D  ++ +S+ +N +
Sbjct: 199 LPHSYLMEYKPHDASLRDNSSYRNTW 224


>04_01_0556 -
           7156851-7157096,7157288-7157530,7158112-7158153,
           7158324-7158425,7159209-7159342,7161071-7161131,
           7161192-7161284,7161557-7161639,7161984-7162239
          Length = 419

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 631 KIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 485
           ++A WT  A+K     + G  L    G+       VHR   VKH +A+K
Sbjct: 180 RVAFWTHQALKPLKQADKGSGLYAVYGLCKSYSISVHRPFHVKHPNASK 228


>12_02_1228 -
           27190983-27191291,27191442-27191675,27191994-27192269,
           27192420-27192696,27192985-27193283,27193341-27193454,
           27193909-27194118,27194567-27194699,27194941-27195221
          Length = 710

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 312 SVKYNFILLL*LRKFSLWDVLNIFYSIKLNYF 407
           +V +N IL+  LR FSL  +L +F  + LNYF
Sbjct: 84  AVVFNRILVFSLRIFSLAAILCVFGILPLNYF 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,208
Number of Sequences: 37544
Number of extensions: 270042
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)