Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m16
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation fa...    82   5e-16
AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation fa...    82   5e-16
AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation fa...    82   5e-16
AL117195-24|CAB55035.1|  201|Caenorhabditis elegans Hypothetical...    62   5e-10
AL117195-23|CAB60769.1|  240|Caenorhabditis elegans Hypothetical...    62   5e-10
AF214652-1|AAF62415.1|  201|Caenorhabditis elegans translation i...    62   5e-10
Z81546-5|CAB04454.2|  212|Caenorhabditis elegans Hypothetical pr...    59   3e-09
U41550-3|AAA83286.1|  228|Caenorhabditis elegans Initiation fact...    54   8e-08
U64605-1|AAF98601.1|  212|Caenorhabditis elegans Initiation fact...    49   3e-06
AF214651-1|AAF62414.1|  212|Caenorhabditis elegans translation i...    49   3e-06
AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF025453-5|AAY55851.1|  279|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform b protein.
          Length = 251

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
 Frame = -3

Query: 751 QRFTDL-DRFWLDVVLLLIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEI 578
           QR T L D +WL++++ ++GE F E  D ICGAVVNVR K DK+++WT DA +    + I
Sbjct: 118 QRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRI 177

Query: 577 GKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 485
           G+ LK++L I     + ++VH+D+  + SS  K
Sbjct: 178 GQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 210


>AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform c protein.
          Length = 250

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
 Frame = -3

Query: 751 QRFTDL-DRFWLDVVLLLIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEI 578
           QR T L D +WL++++ ++GE F E  D ICGAVVNVR K DK+++WT DA +    + I
Sbjct: 117 QRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRI 176

Query: 577 GKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 485
           G+ LK++L I     + ++VH+D+  + SS  K
Sbjct: 177 GQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 209


>AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform a protein.
          Length = 248

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
 Frame = -3

Query: 751 QRFTDL-DRFWLDVVLLLIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEI 578
           QR T L D +WL++++ ++GE F E  D ICGAVVNVR K DK+++WT DA +    + I
Sbjct: 115 QRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRI 174

Query: 577 GKKLKEQLGIHGK--IGFQVHRDTMVKHSSATK 485
           G+ LK++L I     + ++VH+D+  + SS  K
Sbjct: 175 GQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 207


>AL117195-24|CAB55035.1|  201|Caenorhabditis elegans Hypothetical
           protein Y57A10A.30b protein.
          Length = 201

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
 Frame = -3

Query: 736 LDRFWLDVVLLLIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE 560
           LD  WL+++L LIGE F ++ + ICG V NVR +  KI++WT +       + IG  LKE
Sbjct: 98  LDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKE 157

Query: 559 QL-----GIHGK-----IGFQVHRDTMVKHSSATKNLYTV 470
           +L       H K     I +Q HR+ + K +SA K  +++
Sbjct: 158 KLMAAASKAHSKPLFDVIHYQTHRNCVKKTTSALKYKFSL 197


>AL117195-23|CAB60769.1|  240|Caenorhabditis elegans Hypothetical
           protein Y57A10A.30a protein.
          Length = 240

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
 Frame = -3

Query: 736 LDRFWLDVVLLLIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE 560
           LD  WL+++L LIGE F ++ + ICG V NVR +  KI++WT +       + IG  LKE
Sbjct: 137 LDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKE 196

Query: 559 QL-----GIHGK-----IGFQVHRDTMVKHSSATKNLYTV 470
           +L       H K     I +Q HR+ + K +SA K  +++
Sbjct: 197 KLMAAASKAHSKPLFDVIHYQTHRNCVKKTTSALKYKFSL 236


>AF214652-1|AAF62415.1|  201|Caenorhabditis elegans translation
           initiation factor eIF4Eisoform 5 protein.
          Length = 201

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
 Frame = -3

Query: 736 LDRFWLDVVLLLIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE 560
           LD  WL+++L LIGE F ++ + ICG V NVR +  KI++WT +       + IG  LKE
Sbjct: 98  LDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKE 157

Query: 559 QL-----GIHGK-----IGFQVHRDTMVKHSSATKNLYTV 470
           +L       H K     I +Q HR+ + K +SA K  +++
Sbjct: 158 KLMAAASKAHSKPLFDVIHYQTHRNCVKKTTSALKYKFSL 197


>Z81546-5|CAB04454.2|  212|Caenorhabditis elegans Hypothetical
           protein F53A2.6 protein.
          Length = 212

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = -3

Query: 736 LDRFWLDVVLLLIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE 560
           +D  WL++++ L+GE F ++ + ICG V NVR K  KI++WT D       + IG  LKE
Sbjct: 101 VDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKE 160

Query: 559 QL 554
           +L
Sbjct: 161 KL 162


>U41550-3|AAA83286.1|  228|Caenorhabditis elegans Initiation factor
           4e (eif4e) familyprotein 2 protein.
          Length = 228

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = -3

Query: 736 LDRFWLDVVLLLIGENFENSDE-ICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE 560
           +D  W ++++ +IGE F +  E +CG V NVR K  KI++WT ++    A + IG  LK+
Sbjct: 106 MDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQ 165

Query: 559 QL 554
            L
Sbjct: 166 VL 167


>U64605-1|AAF98601.1|  212|Caenorhabditis elegans Initiation factor
           4e (eif4e) familyprotein 4 protein.
          Length = 212

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
 Frame = -3

Query: 730 RFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE--Q 557
           R W ++++ +IGE F   DE+CGAV ++R + D I++W  +A     T  I + L+   Q
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQ 181

Query: 556 LGIHGKIGFQVHRDTMVKHSS---ATKNL 479
           L  +  + ++ H D +   SS    TKN+
Sbjct: 182 LPQNTVLEYKRHDDCLRDQSSYRHTTKNI 210


>AF214651-1|AAF62414.1|  212|Caenorhabditis elegans translation
           initiation factor eIF4Eisoform 4 protein.
          Length = 212

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
 Frame = -3

Query: 730 RFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE--Q 557
           R W ++++ +IGE F   DE+CGAV ++R + D I++W  +A     T  I + L+   Q
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQ 181

Query: 556 LGIHGKIGFQVHRDTMVKHSS---ATKNL 479
           L  +  + ++ H D +   SS    TKN+
Sbjct: 182 LPQNTVLEYKRHDDCLRDQSSYRHTTKNI 210


>AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical
           protein Y105E8A.5 protein.
          Length = 576

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 448 KICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCRVSLAVLSVFS 576
           KI N+ T  CI   +++ A PL + V+G + C + L     F+
Sbjct: 180 KIANSATITCIAKLTKSTAEPLDILVIGTEHCEIFLIDSQAFT 222


>AF025453-5|AAY55851.1|  279|Caenorhabditis elegans Hypothetical
           protein C08F1.11 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 156 LPAMLEDYEIIVRKXGIICLTLMLMFARFCIVCV*HTLNCFFFLK 22
           LP+  E+++ I RK     +TL L+   F       T+NCF F+K
Sbjct: 4   LPSSCEEFQKINRKY----VTLSLLIYNFYFNLALGTINCFHFIK 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,577
Number of Sequences: 27780
Number of extensions: 279802
Number of successful extensions: 665
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)