Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m16
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   7.1  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   7.1  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   7.1  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   7.1  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   7.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   7.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.4  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 82  ISSLSNNYNYNNYNNNYK 99


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 82  ISSLSNNYNYNNYNNNYK 99


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 82  ISSLSNNYNYNNYNNNYK 99


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 82  ISSLSNNYNYNNYNNNYK 99


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 315 ISSLSNNYNYNNYNNNYK 332


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 315 ISSLSNNYNYNNYNNNYK 332


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 315 ISSLSNNYNYNNYNNNYK 332


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 315 ISSLSNNYNYNNYNNNYK 332


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 315 ISSLSNNYNYNNYNNNYK 332


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 379 IFSTSHKLNLRNYNNSIK 326
           I S S+  N  NYNN+ K
Sbjct: 304 ISSLSNNYNYNNYNNNYK 321


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 102 ILYQXSSR*FHNLPTSRVAYLTTYNYVTL 188
           I+YQ S   FH L ++   Y   Y  +T+
Sbjct: 217 IMYQNSDDSFHRLTSNTFDYDPRYTKLTV 245


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 615 VQIAILSTFGLTLTTAPQISS 677
           V ++ L TFG TL  AP++ +
Sbjct: 7   VLLSSLVTFGWTLEDAPRVKT 27


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 672 SSEFSKFSPIKRRTT 716
           SSEFSK S + R T+
Sbjct: 3   SSEFSKISKVDRSTS 17


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 615 VQIAILSTFGLTLTTAPQISS 677
           V ++ L TFG TL  AP++ +
Sbjct: 7   VLLSSLVTFGWTLEDAPRVKT 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,386
Number of Sequences: 438
Number of extensions: 3925
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)