Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m13
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    30   1.4  
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   3.2  
10_01_0164 + 1863890-1866253                                           28   5.6  
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741...    28   7.4  
04_04_0579 - 26355431-26355684,26355988-26356073,26356292-263563...    28   7.4  
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939...    28   7.4  
07_03_1501 - 27005542-27005976,27006657-27008660                       27   9.7  

>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 560 LFIFSIT-SVINLVASESCFYQRCLGCYPQEMISAGSL 450
           L+I+ ++ S   L +S +CFY+ CL  YP   ++   L
Sbjct: 781 LYIYKVSESADRLPSSHTCFYRLCLPAYPSLKVTRNQL 818


>09_02_0077 +
           3964729-3964734,3965194-3965289,3965744-3973579,
           3973665-3973982,3974565-3974763,3974937-3975202,
           3975288-3975574,3976714-3977818,3977900-3978046,
           3978146-3978226,3978315-3978540,3978622-3978761,
           3979539-3979645,3979739-3979841
          Length = 3638

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 284 CIPRAQIDSVCLGLIAVEKARGHSDVRCFI 195
           CIP+  +D++CL    ++  + H+ +RCF+
Sbjct: 522 CIPQC-LDALCLNSSGLQLVKDHNALRCFV 550


>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 479 PQEMISAGSLVECHPRNWVSAQW 411
           P  +I  GSLV+ HP  W+  +W
Sbjct: 274 PCRVICKGSLVKKHPATWLEFEW 296


>06_01_0964 -
           7417158-7417517,7417596-7417868,7418400-7418810,
           7419270-7419347
          Length = 373

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 326 DDKTYGNTMDVIRGCIPRAQIDSVCLGLIAVEK 228
           D+  Y  ++  I GC+ ++    VC GL+  EK
Sbjct: 229 DEDVYNGSLSHILGCVAKSLESLVCKGLVNKEK 261


>04_04_0579 -
           26355431-26355684,26355988-26356073,26356292-26356377,
           26356596-26356788,26356895-26357094,26359257-26359379
          Length = 313

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -1

Query: 485 CYPQEMISAGSLVECHPRNWVSAQWVLNYGHPPPSTDSRIPIEYSCLKMVATPDDKTYGN 306
           CY    +S  S +E  P +W+S  W    GH P      +   +     ++T +D+T  +
Sbjct: 177 CYNFPPLSYLSSIELSPSSWMSVFW-YPIGHVPAMNKKDLTTCFLTYHSLSTLEDRTPFD 235

Query: 305 TMD 297
           + D
Sbjct: 236 SKD 238


>01_06_1818 -
           40093327-40093384,40093501-40093580,40093661-40093946,
           40095007-40095291,40095386-40095513,40095625-40096560,
           40096650-40096712,40096801-40096854,40096963-40097139,
           40097452-40097583,40097666-40097785,40097935-40098627,
           40098760-40099158,40099263-40099271
          Length = 1139

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 236 VEKARGHSDVRCFICNGDSCNSSTRLQKTPLLFILALSLYYIF 108
           +++ R    +R   C+   C ++TRLQ  PLL   + +L Y+F
Sbjct: 865 IDEMRERVRMRGLRCHLMYCRNATRLQVVPLLASRSQALRYLF 907


>07_03_1501 - 27005542-27005976,27006657-27008660
          Length = 812

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -1

Query: 371 RIPIEYSCLKMVATPDDKTYGNTMDVIRGCIPRAQIDSVCLGLIAVEKARGHSDVRCFI 195
           R P+E+    M A       G   DV+    P  ++ +  L +  +EKA  H    CF+
Sbjct: 59  RRPVEHQVSSMHAATASDDGGGVDDVV----PERKVTAFALHVAVLEKAASHVGAVCFV 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,285,504
Number of Sequences: 37544
Number of extensions: 358770
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)