Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16m11
(863 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U78525-1|AAC99479.1| 814|Homo sapiens eukaryotic translation in... 203 7e-52
U62583-1|AAB42010.1| 873|Homo sapiens Prt1 homolog protein. 203 7e-52
BC110865-1|AAI10866.1| 814|Homo sapiens eukaryotic translation ... 203 7e-52
BC009986-1|AAH09986.1| 622|Homo sapiens Unknown (protein for IM... 203 7e-52
BC001173-1|AAH01173.1| 814|Homo sapiens EIF3S9 protein protein. 203 7e-52
AK126670-1|BAC86636.1| 152|Homo sapiens protein ( Homo sapiens ... 130 5e-30
BC011885-1|AAH11885.1| 585|Homo sapiens eukaryotic translation ... 52 4e-06
AK027356-1|BAB55058.1| 585|Homo sapiens protein ( Homo sapiens ... 52 4e-06
AF497978-1|AAM83402.1| 585|Homo sapiens eukaryotic translation ... 52 4e-06
AF212241-1|AAK14926.1| 609|Homo sapiens CDA02 protein. 52 4e-06
AF109358-1|AAQ13506.1| 317|Homo sapiens MSTP004 protein. 52 4e-06
AB209381-1|BAD92618.1| 170|Homo sapiens eukaryotic translation ... 39 0.020
U20980-1|AAA76737.1| 559|Homo sapiens chromatin assembly factor... 31 5.4
BC021218-1|AAH21218.1| 559|Homo sapiens chromatin assembly fact... 31 5.4
AP001725-3|BAA95549.1| 559|Homo sapiens chromatin assembly fact... 31 5.4
AP000694-1|BAA89426.1| 559|Homo sapiens chromatin assembly fact... 31 5.4
BC035024-1|AAH35024.1| 520|Homo sapiens chromosome 16 open read... 31 7.2
AF447587-1|AAM22870.1| 520|Homo sapiens unknown protein. 31 7.2
>U78525-1|AAC99479.1| 814|Homo sapiens eukaryotic translation
initiation factor protein.
Length = 814
Score = 203 bits (495), Expect = 7e-52
Identities = 98/199 (49%), Positives = 128/199 (64%)
Frame = -1
Query: 863 YQVNTGQAXTLLKKFERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADH 684
Y V L+K F+++ +FWSP GQF+VLA L GAL F+DT+D T+MN+A+H
Sbjct: 592 YHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEH 651
Query: 683 YQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRPPTL 504
Y S +EWDPTGRYVVT VS K+D Y++W+FQG++L++ K+ F Q WRPRPPTL
Sbjct: 652 YMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTL 711
Query: 503 LSXXXXXXXXXXXXKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 324
LS KY FE KDR+ SKASKELV +R M+ F +YR+ + + EQ
Sbjct: 712 LSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQ 771
Query: 323 KPRRLELRDYVDTDGLDTD 267
K RLELR VDTD LD++
Sbjct: 772 KNERLELRGGVDTDELDSN 790
>U62583-1|AAB42010.1| 873|Homo sapiens Prt1 homolog protein.
Length = 873
Score = 203 bits (495), Expect = 7e-52
Identities = 98/199 (49%), Positives = 128/199 (64%)
Frame = -1
Query: 863 YQVNTGQAXTLLKKFERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADH 684
Y V L+K F+++ +FWSP GQF+VLA L GAL F+DT+D T+MN+A+H
Sbjct: 592 YHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEH 651
Query: 683 YQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRPPTL 504
Y S +EWDPTGRYVVT VS K+D Y++W+FQG++L++ K+ F Q WRPRPPTL
Sbjct: 652 YMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTL 711
Query: 503 LSXXXXXXXXXXXXKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 324
LS KY FE KDR+ SKASKELV +R M+ F +YR+ + + EQ
Sbjct: 712 LSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQ 771
Query: 323 KPRRLELRDYVDTDGLDTD 267
K RLELR VDTD LD++
Sbjct: 772 KNERLELRGGVDTDELDSN 790
>BC110865-1|AAI10866.1| 814|Homo sapiens eukaryotic translation
initiation factor 3, subunit B protein.
Length = 814
Score = 203 bits (495), Expect = 7e-52
Identities = 98/199 (49%), Positives = 128/199 (64%)
Frame = -1
Query: 863 YQVNTGQAXTLLKKFERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADH 684
Y V L+K F+++ +FWSP GQF+VLA L GAL F+DT+D T+MN+A+H
Sbjct: 592 YHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEH 651
Query: 683 YQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRPPTL 504
Y S +EWDPTGRYVVT VS K+D Y++W+FQG++L++ K+ F Q WRPRPPTL
Sbjct: 652 YMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTL 711
Query: 503 LSXXXXXXXXXXXXKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 324
LS KY FE KDR+ SKASKELV +R M+ F +YR+ + + EQ
Sbjct: 712 LSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQ 771
Query: 323 KPRRLELRDYVDTDGLDTD 267
K RLELR VDTD LD++
Sbjct: 772 KNERLELRGGVDTDELDSN 790
>BC009986-1|AAH09986.1| 622|Homo sapiens Unknown (protein for
IMAGE:4124553) protein.
Length = 622
Score = 203 bits (495), Expect = 7e-52
Identities = 98/199 (49%), Positives = 128/199 (64%)
Frame = -1
Query: 863 YQVNTGQAXTLLKKFERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADH 684
Y V L+K F+++ +FWSP GQF+VLA L GAL F+DT+D T+MN+A+H
Sbjct: 400 YHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEH 459
Query: 683 YQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRPPTL 504
Y S +EWDPTGRYVVT VS K+D Y++W+FQG++L++ K+ F Q WRPRPPTL
Sbjct: 460 YMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTL 519
Query: 503 LSXXXXXXXXXXXXKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 324
LS KY FE KDR+ SKASKELV +R M+ F +YR+ + + EQ
Sbjct: 520 LSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQ 579
Query: 323 KPRRLELRDYVDTDGLDTD 267
K RLELR VDTD LD++
Sbjct: 580 KNERLELRGGVDTDELDSN 598
>BC001173-1|AAH01173.1| 814|Homo sapiens EIF3S9 protein protein.
Length = 814
Score = 203 bits (495), Expect = 7e-52
Identities = 98/199 (49%), Positives = 128/199 (64%)
Frame = -1
Query: 863 YQVNTGQAXTLLKKFERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADH 684
Y V L+K F+++ +FWSP GQF+VLA L GAL F+DT+D T+MN+A+H
Sbjct: 592 YHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEH 651
Query: 683 YQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRPPTL 504
Y S +EWDPTGRYVVT VS K+D Y++W+FQG++L++ K+ F Q WRPRPPTL
Sbjct: 652 YMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTL 711
Query: 503 LSXXXXXXXXXXXXKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQ 324
LS KY FE KDR+ SKASKELV +R M+ F +YR+ + + EQ
Sbjct: 712 LSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQ 771
Query: 323 KPRRLELRDYVDTDGLDTD 267
K RLELR VDTD LD++
Sbjct: 772 KNERLELRGGVDTDELDSN 790
>AK126670-1|BAC86636.1| 152|Homo sapiens protein ( Homo sapiens
cDNA FLJ44714 fis, clone BRACE3020669, highly similar
to Eukaryotic translation initiation factor 3 subunit 9.
).
Length = 152
Score = 130 bits (315), Expect = 5e-30
Identities = 60/112 (53%), Positives = 76/112 (67%)
Frame = -1
Query: 740 GALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILR 561
GAL F+DT+D T+MN+A+HY S +EWDPTGRYVVT VS K+D Y++W+FQG++L+
Sbjct: 30 GALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQ 89
Query: 560 RVMKEGFAQFHWRPRPPTLLSXXXXXXXXXXXXKYYSQFESKDRMRSSKASK 405
+ K+ F Q WRPRPPTLLS KY FE KDR+ SKASK
Sbjct: 90 KNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASK 141
>BC011885-1|AAH11885.1| 585|Homo sapiens eukaryotic translation
initiation factor 2A, 65kDa protein.
Length = 585
Score = 51.6 bits (118), Expect = 4e-06
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = -1
Query: 821 FERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRY 642
F P ++SP G +VLA G G +E D ++ +++ + W P G +
Sbjct: 312 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 371
Query: 641 VVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFA---QFHWRP 519
++T + + +++ GY IW + G IL + A Q W+P
Sbjct: 372 ILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQP 415
>AK027356-1|BAB55058.1| 585|Homo sapiens protein ( Homo sapiens
cDNA FLJ14450 fis, clone HEMBB1001736, weakly similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 9. ).
Length = 585
Score = 51.6 bits (118), Expect = 4e-06
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = -1
Query: 821 FERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRY 642
F P ++SP G +VLA G G +E D ++ +++ + W P G +
Sbjct: 312 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 371
Query: 641 VVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFA---QFHWRP 519
++T + + +++ GY IW + G IL + A Q W+P
Sbjct: 372 ILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQP 415
>AF497978-1|AAM83402.1| 585|Homo sapiens eukaryotic translation
initiation factor 2A protein.
Length = 585
Score = 51.6 bits (118), Expect = 4e-06
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = -1
Query: 821 FERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRY 642
F P ++SP G +VLA G G +E D ++ +++ + W P G +
Sbjct: 312 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 371
Query: 641 VVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFA---QFHWRP 519
++T + + +++ GY IW + G IL + A Q W+P
Sbjct: 372 ILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQP 415
>AF212241-1|AAK14926.1| 609|Homo sapiens CDA02 protein.
Length = 609
Score = 51.6 bits (118), Expect = 4e-06
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = -1
Query: 821 FERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRY 642
F P ++SP G +VLA G G +E D ++ +++ + W P G +
Sbjct: 336 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 395
Query: 641 VVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFA---QFHWRP 519
++T + + +++ GY IW + G IL + A Q W+P
Sbjct: 396 ILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQP 439
>AF109358-1|AAQ13506.1| 317|Homo sapiens MSTP004 protein.
Length = 317
Score = 51.6 bits (118), Expect = 4e-06
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = -1
Query: 821 FERKPFXHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRY 642
F P ++SP G +VLA G G +E D ++ +++ + W P G +
Sbjct: 98 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 157
Query: 641 VVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFA---QFHWRP 519
++T + + +++ GY IW + G IL + A Q W+P
Sbjct: 158 ILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQP 201
>AB209381-1|BAD92618.1| 170|Homo sapiens eukaryotic translation
initiation factor 3, subunit 9 eta, 116kDa isoform b var
protein.
Length = 170
Score = 39.1 bits (87), Expect = 0.020
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 863 YQVNTGQAXTLLKKFERKPFXHLFWSPSGQFIVLANL 753
Y V L+K F+++ +FWSP GQF+VLA L
Sbjct: 132 YHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGL 168
>U20980-1|AAA76737.1| 559|Homo sapiens chromatin assembly factor-I
p60 subunit protein.
Length = 559
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 791 WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 633
W+ G + A++ T + +I N Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188
>BC021218-1|AAH21218.1| 559|Homo sapiens chromatin assembly factor
1, subunit B (p60) protein.
Length = 559
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 791 WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 633
W+ G + A++ T + +I N Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188
>AP001725-3|BAA95549.1| 559|Homo sapiens chromatin assembly
factor-I p60 subunit protein.
Length = 559
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 791 WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 633
W+ G + A++ T + +I N Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188
>AP000694-1|BAA89426.1| 559|Homo sapiens chromatin assembly factor
1, subunit B (p60) protein.
Length = 559
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 791 WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 633
W+ G + A++ T + +I N Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188
>BC035024-1|AAH35024.1| 520|Homo sapiens chromosome 16 open reading
frame 71 protein.
Length = 520
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 712 SFVSKNSNAPPVSPRLARTMNCPDGDQK 795
SF +K S PP P+ T++C +GD K
Sbjct: 155 SFNTKGSQGPPWDPQAEATLSCHEGDPK 182
>AF447587-1|AAM22870.1| 520|Homo sapiens unknown protein.
Length = 520
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 712 SFVSKNSNAPPVSPRLARTMNCPDGDQK 795
SF +K S PP P+ T++C +GD K
Sbjct: 155 SFNTKGSQGPPWDPQAEATLSCHEGDPK 182
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,454,046
Number of Sequences: 237096
Number of extensions: 2281847
Number of successful extensions: 5347
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5342
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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