Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m08
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    43   6e-05
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    42   1e-04
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    39   8e-04
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    36   0.007
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    30   0.47 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   7.7  

>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 26/86 (30%), Positives = 42/86 (48%)
 Frame = -3

Query: 820 TLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRG 641
           T +EA+++ N + YG G+ +F+TN  T   FS +I+ G   +N    V      + G + 
Sbjct: 416 TNEEALELANDSEYGLGSGVFSTNPKTLEFFSNNIEAGMCSLN-NYHVVTHELPWIGWKH 474

Query: 640 SFLGTNHFCGKQGLDFYTELKTVVSF 563
           S LG      K G + Y  LK +  +
Sbjct: 475 SGLGVG--LSKHGYNEYMRLKQITQY 498


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = -3

Query: 823 ETLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTR 644
           +T DEAI+  N+  YG     FT +   A + S +++ G V +N      +    F G +
Sbjct: 408 KTEDEAIEKANNTTYGLAAMCFTKDLERAHRVSDELEAGMVFINSTENSDIQA-PFGGIK 466

Query: 643 GSFLGTNHFCGKQGLDFYTELKTV 572
            S +G     G  G++ YT++K V
Sbjct: 467 MSGIGNE--LGSNGIEMYTQIKAV 488


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 28/90 (31%), Positives = 42/90 (46%)
 Frame = -3

Query: 841 LVCLFXETLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMF 662
           L  +  +T++EAI+  N++ YG    + T N   A K S  ++ G V VN    +     
Sbjct: 407 LAVIKFKTIEEAIRRGNNSTYGLAAGVHTNNITNAIKVSNALEAGTVWVNC-YNLLHHQI 465

Query: 661 SFSGTRGSFLGTNHFCGKQGLDFYTELKTV 572
            F G + S +G     G  GL  YT+ K V
Sbjct: 466 PFGGYKESGIGRE--LGSYGLTNYTQTKAV 493


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 24/86 (27%), Positives = 42/86 (48%)
 Frame = -3

Query: 829 FXETLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSG 650
           F +T +E I+  N +  G    +FT N +T    + +++VG VG N+ + V     SF G
Sbjct: 407 FDDT-EEVIEWANDSDVGLAGYVFTNNLSTMIHVAKELEVGLVGANIEM-VDEPFISFGG 464

Query: 649 TRGSFLGTNHFCGKQGLDFYTELKTV 572
            + S  G     G+ G+  +  +K +
Sbjct: 465 IKQSGFGKE--AGRLGVQEFMVVKEI 488


>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -1

Query: 201 PKEPQDLKWPKRSI---FAFDVQMDEHYN 124
           PK+P+DLK  KRS+   F F    +EHYN
Sbjct: 125 PKDPEDLKRLKRSVAGNFLFKNLDEEHYN 153


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 629  SQKTAARSRKREHRQRHGNGHVDAHLTDVDIRGELPSRRTISGENSRS 772
            S  +   S+  EH   H  GH D+  T   +  +  SR+++    SRS
Sbjct: 1295 STSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQ-DSRKSLHRHLSRS 1341


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 793 NSNPYGNGTAIFTTNGATARKFSADIDVGQV--GVNVPIPVPLS 668
           +S P+GN T   + +G+T    + +   G V   V  P   PLS
Sbjct: 567 SSTPFGNSTITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLS 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,690
Number of Sequences: 5004
Number of extensions: 61536
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)