Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16m08
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0637 + 4767021-4767083,4767175-4767249,4767339-4767500,476... 134 1e-31
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 38 0.013
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 38 0.013
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 36 0.031
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 36 0.031
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 34 0.16
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 34 0.16
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 33 0.28
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 28 8.1
04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527 28 8.1
>07_01_0637 +
4767021-4767083,4767175-4767249,4767339-4767500,
4767624-4767702,4767922-4768076,4768225-4768288,
4768928-4769007,4769366-4769431,4769932-4769982,
4770087-4770238,4770270-4770287,4770323-4770413,
4771156-4771236,4771330-4771407,4772315-4772350,
4772425-4772468,4772567-4772645,4773035-4773125,
4773268-4773374
Length = 523
Score = 134 bits (323), Expect = 1e-31
Identities = 60/112 (53%), Positives = 83/112 (74%)
Frame = -3
Query: 841 LVCLFXETLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMF 662
L+ + E+LD+AIQ++N N YGNG +IFTT+G +ARKF DI+ GQVG+NVPIPVPL F
Sbjct: 413 LLLMKAESLDDAIQIVNRNKYGNGASIFTTSGVSARKFQTDIEAGQVGINVPIPVPLPFF 472
Query: 661 SFSGTRGSFLGTNHFCGKQGLDFYTELKTVVSFWRESDVSHAKPAVSMPTQQ 506
SF+G++ SF G +F GK G+ F+T++KTV W+ES + ++SMPT Q
Sbjct: 473 SFTGSKASFAGDLNFYGKAGVQFFTQIKTVTQQWKESPAQ--RVSLSMPTSQ 522
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = -3
Query: 820 TLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRG 641
T +EAI++ N YG A+ + + ++ + +ID G + VN P + G +
Sbjct: 427 TEEEAIELANDTHYGLAGAVLSGDRERCQRLTEEIDAGIIWVNCSQPC-FCQAPWGGNKR 485
Query: 640 SFLGTNHFCGKQGLDFYTELKTVVSF 563
S G G+ G+D Y +K V +
Sbjct: 486 SGFGRE--LGEGGIDNYLSVKQVTEY 509
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/85 (30%), Positives = 41/85 (48%)
Frame = -3
Query: 823 ETLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTR 644
+T ++AI+M N G IFT + + + S ++ G VGVN I + + F G +
Sbjct: 469 KTEEDAIRMANDTNAGLAAYIFTKSIPRSWRVSEALEYGLVGVNEGI-ISTEVAPFGGVK 527
Query: 643 GSFLGTNHFCGKQGLDFYTELKTVV 569
S LG K G+D Y E+ +
Sbjct: 528 QSGLGREG--SKYGMDEYLEVSIAI 550
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 36.3 bits (80), Expect = 0.031
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -3
Query: 814 DEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVN-VPIPVPLSMFSFSGTRGS 638
+E +++ N + YG G A+F+ N A K ++ + G +N F G + S
Sbjct: 425 EEVVKLANDSKYGLGCAVFSGNQKRAIKIASQLHCGVAAINDFASSYMCQSLPFGGVKDS 484
Query: 637 FLGTNHFCGKQGLDFYTELKTVV 569
G F G +GL +K VV
Sbjct: 485 --GFGRFAGVEGLRACCLVKAVV 505
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 36.3 bits (80), Expect = 0.031
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = -3
Query: 823 ETLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTR 644
+T++EAI+ N YG I T N A S + G V VN F G +
Sbjct: 425 KTVEEAIEKANCTKYGLAAGIVTKNLNIANMVSRSVRAGTVWVNCYFAFDPDA-PFGGYK 483
Query: 643 GSFLGTNHFCGKQGLDFYTELKTVVS 566
S G + G +D Y ++KTV++
Sbjct: 484 MSGFGRDQ--GMVAMDKYLQVKTVIT 507
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = -3
Query: 823 ETLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVN-VPIPVPLSMFSFSGT 647
+ ++++IQ INS +FT + +F +++ G + VN V + + F G
Sbjct: 365 DKIEDSIQFINSRTKPLAAYLFTKDKKLQEEFVSNVPAGGMLVNDVALHLANPHLPFGGV 424
Query: 646 RGSFLGTNHFCGKQGLDFYTELKTVV 569
S +G+ H GK D +T K V+
Sbjct: 425 GDSGIGSYH--GKFSFDCFTHKKAVL 448
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/85 (29%), Positives = 38/85 (44%)
Frame = -3
Query: 820 TLDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRG 641
T++E ++ N+ PYG +FT A + + VG V VN V + F G +
Sbjct: 494 TVEEVVRRANATPYGLAAGVFTQRLDAANTLARALRVGTVWVNT-YDVFDAAVPFGGYKM 552
Query: 640 SFLGTNHFCGKQGLDFYTELKTVVS 566
S +G G L Y + K VV+
Sbjct: 553 SGVGREK--GVYSLRNYLQTKAVVT 575
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -3
Query: 817 LDEAIQMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGS 638
L+E I+ N++ YG +FT N TA + + VG V VN V + F G + S
Sbjct: 461 LNEVIKRANASQYGLAAGVFTNNLNTANTLTRALRVGTVWVNC-FDVFDAAIPFGGYKQS 519
Query: 637 FLG 629
+G
Sbjct: 520 GIG 522
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 823 ETLDEAIQMINSNPYGNGTAIFTTNGATARKFSA--DIDVGQVGVNVP 686
+ L EA+++ NS P G ++IFT K+ D G V VN+P
Sbjct: 434 QNLKEAVEINNSVPQGLSSSIFTKRPDIIFKWIGPHGSDCGIVNVNIP 481
>04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527
Length = 281
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 419 RSVALKKIVQKPSSNNSKD 475
R VA+KKI +KPS N KD
Sbjct: 55 REVAVKKIFRKPSGENHKD 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,175
Number of Sequences: 37544
Number of extensions: 371121
Number of successful extensions: 999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -