Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m07
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   318   5e-88
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   1.1  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    29   1.1  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   1.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    28   2.0  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   4.6  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    26   8.0  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   8.0  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  318 bits (782), Expect = 5e-88
 Identities = 147/219 (67%), Positives = 182/219 (83%), Gaps = 1/219 (0%)
 Frame = -1

Query: 816 KLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKQN-TEKVAEGALPVYLLDRDVQSRAK 640
           K RGIKAK++ ++RR EKIQMKK IK HEE+N  Q  ++   +GA+P YLLDR+ +S+AK
Sbjct: 41  KTRGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAK 100

Query: 639 VLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENF 460
           +LS+ +KQKRKEKA K+ VP+P+VR  A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ F
Sbjct: 101 MLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGF 160

Query: 459 TRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVI 280
           TR+P K+ERFIRPMALR KKA+VTH EL  T  LPIIGVKKNP S  YT LGV+TKGTVI
Sbjct: 161 TRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVI 220

Query: 279 EVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 163
           EVN+SELGLVT  GKVVWGKYAQ+TNNPE DGC+NA+LL
Sbjct: 221 EVNVSELGLVTSGGKVVWGKYAQITNNPELDGCVNALLL 259


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 691 FGDLLCVLFDILLFVRFDFLFHLNLFIAAFLIEYFS 798
           F  LL   F +L F+ F F F    F++   I YFS
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFS 148


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/84 (26%), Positives = 46/84 (54%)
 Frame = -1

Query: 780 ERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 601
           E+ + K+++ ++     +K +++ TEK+ +  +     +R VQS  +   +M +QK +E 
Sbjct: 82  EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140

Query: 600 AGKWDVPIPKVRAQADAEVFKVLK 529
             K+     KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 423 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 301
           PM   F +    HP  K  FC+P + ++  P       LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -1

Query: 390 THPELKATFCL-PIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVV-WGKY 217
           T P ++A FC+ P + +   PS +   +L + +  ++ E+N     +VTQ+       K 
Sbjct: 137 TSPGIRAGFCIFPSLNI---PSGE---NLQIKSSSSLEEINKIPENIVTQSLSYTNLLKK 190

Query: 216 AQVTNNPENDGCINAVLL 163
            + + NP N+GC  ++ L
Sbjct: 191 FETSPNPSNNGCFRSLAL 208


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -1

Query: 564  AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 427
            A  +++  K+L +   K+   KR+V+++T +  N T    + +R++
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -1

Query: 783 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPV 676
           + + NE  + + +  ++ E+N  +NTE++AE + P+
Sbjct: 98  ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = -1

Query: 852 LVSXINALKRRAKLRGIKAKIFNKER----RNEKIQMKKKIKAHEEKNVKQNTEKVAE 691
           + + +NA+KR +++   + ++F K+R    R +++Q  +K+ A   +NV Q TE   E
Sbjct: 87  IATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIA---QNVPQFTEPEGE 141


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 711 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 577
           N  K +E    +  +++D+  R+ +LSN+ K        K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,741
Number of Sequences: 5004
Number of extensions: 63711
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)