Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16m07
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 334 5e-92
03_02_0189 - 6253659-6255380 32 0.52
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 31 1.6
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 30 2.1
11_06_0284 + 21909758-21913645 29 4.8
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 29 4.8
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 29 6.4
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 29 6.4
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 6.4
>07_03_1651 - 28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 334 bits (821), Expect = 5e-92
Identities = 158/219 (72%), Positives = 178/219 (81%)
Frame = -1
Query: 816 KLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKV 637
+L G K K F K+R EK QMKK +K H+E +Q + V EGALP YLLDRD RAKV
Sbjct: 372 QLLGAKGKRFAKKRYAEKAQMKKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKV 431
Query: 636 LSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFT 457
LSN IKQKR EKAGKW+VP+PKVR A+ E+FKVL++GK K K WKRMVTK TFVG FT
Sbjct: 432 LSNTIKQKRMEKAGKWEVPLPKVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFT 491
Query: 456 RKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIE 277
RKPPK+ERFIRP LRF KAHVTHPELK TF L II VKKNP+ QMY++LGV+T+GT+IE
Sbjct: 492 RKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLDIISVKKNPNGQMYSTLGVLTRGTIIE 551
Query: 276 VNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 160
VN+SELGLVT AGKVVWGKYAQVTNNPENDGCINAVLLV
Sbjct: 552 VNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 590
>03_02_0189 - 6253659-6255380
Length = 573
Score = 32.3 bits (70), Expect = 0.52
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Frame = -1
Query: 630 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV--LKSGKSKRKAWKRMVTKVTFVGENFT 457
N ++ +KEKA + P P RA A KV S +K K V K T +
Sbjct: 68 NKVEYGKKEKATRIGGPKPSSRASALKVKPKVSSFNSKPAKSTLPKSAVVKKTLKIDESL 127
Query: 456 RKPPKFERFIRPMAL--RFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTV 283
FE P L R K ++ P + +PII K + Q YT G T +
Sbjct: 128 FSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSGK-TLAYL 186
Query: 282 IEVNISELG 256
+ + +SE+G
Sbjct: 187 LPI-LSEIG 194
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +2
Query: 347 PIIGKQKVAFSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 526
PII AF+ A + + L+ + + GL+V F + L F + FD
Sbjct: 389 PIITITDNAFNPVGYCLAIMKSEGVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDES 448
Query: 527 DFRTLNTSASA*ALTLGMGTSHF 595
+N S SA G+G S +
Sbjct: 449 SRLPVNPSPSAVPSKPGLGPSSY 471
>04_04_1253 +
32097840-32097963,32098154-32098329,32098413-32098622,
32098720-32098879,32098993-32099212,32099288-32099438
Length = 346
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = -1
Query: 699 VAEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 532
VA GA P +D V + +++ M K EKA W +P+ + AE+F
Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260
Query: 531 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 439
+ S R + T VT + K P++
Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQY 291
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 763 DSDEKENQSARREECQTEHREGRR 692
+ EKE + R+EE Q E +EGR+
Sbjct: 480 EKQEKEKEEERKEEGQNEEKEGRK 503
>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
Length = 271
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 708 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 547
TE++ EG + L D++ + +M+K KEK K P P++ +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 281 ITVPLVMTPKLVYICELGFFLTPIIGK 361
+TV L+MTP +++ + F L +IGK
Sbjct: 71 LTVSLIMTPLALFVAFVSFHLAALIGK 97
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 684 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 523
LP+Y +DRD + +LS + + R + A + +P+ + A + DA+ + +L G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 567 RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK--PPKFERFIRP 421
+ Q +V K +KSG KRK+ K++ T VTF +K PK+ R P
Sbjct: 13 KTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,677,433
Number of Sequences: 37544
Number of extensions: 364467
Number of successful extensions: 1090
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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