Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m02
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   3.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   7.1  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 305 NIDKYFFSDTCSFYLI*TGRGLPPKRKA*L--ILSRNQQNSGVIDT 174
           ++D++FF D   FYL   G  L   + + L  IL   + +S ++DT
Sbjct: 151 SVDEFFFGDCAPFYLAPAGSNLEIDQLSRLVEILEGGEISSEILDT 196


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 525 QSVCLLPNKLCDDSLHRHPCCKSNVIVYLHRL 430
           + V L+P+ L DD   RHP  + +V+ ++  L
Sbjct: 64  EPVYLMPSPLTDDLKRRHPNLQLSVVSHISSL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,398
Number of Sequences: 5004
Number of extensions: 66771
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)