Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m01
         (702 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2167|AAF53171.1| 1354|Drosophila melanogaster CG17211-P...    29   6.1  
AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-P...    29   8.1  

>AE014134-2167|AAF53171.1| 1354|Drosophila melanogaster CG17211-PA
            protein.
          Length = 1354

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 586  IDSSTSGTTQGWSDRVSELTRVDDELIDKIQV 681
            I SSTSGTT   S   S  T  +  LIDK ++
Sbjct: 1036 ISSSTSGTTSTTSTSTSTTTEKEAPLIDKYEI 1067


>AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-PB,
           isoform B protein.
          Length = 2133

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 511 QEIVQLSQQPKQQHRCLHHRSLTSPGCSSVPPISWINH 398
           Q+I Q  QQ    ++ LHH   +S    S    S++NH
Sbjct: 63  QQIHQQQQQHPHHYQQLHHHPTSSTSVGSSSSASYVNH 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,957,050
Number of Sequences: 53049
Number of extensions: 417853
Number of successful extensions: 1339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)