Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m01
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered cut...    28   5.6  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    28   7.4  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformb protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 592 SSTSGTTQGWSDRVSELTRVDDELIDKIQ 678
           S+T  T+QG   RV +LT   DE++++I+
Sbjct: 638 SATPATSQGVLSRVHQLTSQGDEVVERIR 666


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 405 SITDLLRGVGNGNDATGLVANAQRYIAQAASQVHV*IRTVNNVYI 271
           S+TDL+RG+ N  D      N  RYI Q   ++   +R  +++Y+
Sbjct: 17  SLTDLIRGIRNNKD------NESRYITQCMEEIKQELRQ-DSIYV 54


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -3

Query: 226 YHYKTIYLYKNR--LKLIIMYTLIVFR--TFYANCVCVRIF 116
           Y +  +YLY     +++I+  T ++F    FY N VC++++
Sbjct: 14  YFWLPVYLYNEPDIVRIIVSITELIFYFFAFYINSVCLKVY 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,711,572
Number of Sequences: 27780
Number of extensions: 213100
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)