Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16m01
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.40 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 411  AGSITDLLRGVGNGNDATGLVANAQRYIAQAASQ 310
            +G +  L RG  +GN+ +G  AN+Q+   Q + +
Sbjct: 1554 SGLVVQLQRGYNSGNNRSGEQANSQQQQQQQSGE 1587


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 472  HRCLHHRSLTSPGCSSVPP 416
            H  ++H    + GC+S PP
Sbjct: 1738 HSFMYHEHAMTEGCASPPP 1756


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 472  HRCLHHRSLTSPGCSSVPP 416
            H  ++H    + GC+S PP
Sbjct: 1734 HSFMYHEHAMTEGCASPPP 1752


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 184 LIIMYTLIVFRTFYANCVCVRIF 116
           L I+Y++++  +   NC  + IF
Sbjct: 60  LAIIYSMLLIMSLVGNCCVIWIF 82


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 184 LIIMYTLIVFRTFYANCVCVRIF 116
           L I+Y++++  +   NC  + IF
Sbjct: 60  LAIIYSMLLIMSLVGNCCVIWIF 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,310
Number of Sequences: 438
Number of extensions: 3032
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)