Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16l24
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    28   0.89 
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    27   2.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   2.7  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   8.3  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  FRICYIFSSMFEYRILSGRCYRC 117
           F  CY+FSS F Y+  S R Y C
Sbjct: 149 FAFCYLFSSYFSYK--SSRQYTC 169


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 241 SAI*ASTTDGGARSPLWVPGSGCDPWRYPRVDCAIVPAS 357
           S I     DG  R PLW+ G   +P  + +  C I P S
Sbjct: 211 SLIMCCNADGSERLPLWIVGYAQNPRSFEQ--CGIFPKS 247


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 463 HFINKNGLESDYCFMHHASSSFDCPSTCHRW 371
           H+I K+G  S+    H+ S   D  + CHR+
Sbjct: 92  HYIRKHGPLSEREAAHYLSQILDAVAHCHRF 122


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 98  LNIRYSNILENI*QIRKKKIFLEKTNKKCNQK 3
           L +RY+N+  N+ +   +KIF+ K  +   +K
Sbjct: 170 LPVRYANVQSNLIKYWLQKIFIGKVKRSIPEK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,632
Number of Sequences: 5004
Number of extensions: 36676
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)