Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16l21
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 196  AVGTSPGTGQYTSVDQERADELFSTSNRTFGSSPILMPMFMHSAVAIPVMPIN 354
            A    PGT    +  Q +  + F++     G + I MP FM     +P  P N
Sbjct: 1112 ATNIRPGTAD--NKPQLKPQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFN 1162


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
 Frame = +3

Query: 591 YCTRIDQKRSFFRMSHNAIFAQVHVEHDFIA------GQYGNDHVDSINGCSNGVGWRHS 752
           YC    +  +F RM  N I  Q+  + +  A      GQ G   +D+I       GW H 
Sbjct: 314 YCAAT-KNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHH 372

Query: 753 VLGRCVQC 776
           +    V C
Sbjct: 373 LARHAVAC 380


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 462  TTSGHEGQGSVLSTHDS 512
            T SGH G G +L+ +D+
Sbjct: 1927 TGSGHGGHGGLLTPYDT 1943


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 29  SLSGRSPWTARCGRAELRQRPMGSANE 109
           +++ RSP  A  G +++RQRP+  +++
Sbjct: 910 NVTPRSPGRAWPGDSDIRQRPIPRSDD 936


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 115 NAMPLANSKSLTISSFLKPPS*FLLDGAVGTSPGTGQYTSV 237
           NA  +  S+       LKP + + +     T+ G G+YT V
Sbjct: 469 NATVIQTSELSATFKGLKPSTDYAIQVRAKTTRGWGEYTPV 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,036
Number of Sequences: 438
Number of extensions: 6209
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)