Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16l18
(838 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S72869-1|AAC60637.1| 585|Homo sapiens H4(D10S170) protein. 35 0.42
BC064391-1|AAH64391.1| 474|Homo sapiens coiled-coil domain cont... 35 0.42
BC036757-1|AAH36757.2| 474|Homo sapiens coiled-coil domain cont... 35 0.42
U07664-1|AAB60647.1| 401|Homo sapiens HB9 homeobox protein prot... 31 3.9
AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha ... 31 3.9
AK074126-1|BAB84952.1| 677|Homo sapiens FLJ00198 protein protein. 31 3.9
AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin receptor-i... 31 3.9
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i... 31 3.9
L12699-1|AAA53502.2| 392|Homo sapiens engrailed protein protein. 31 5.2
CR542139-1|CAG46936.1| 284|Homo sapiens PEF protein. 31 5.2
BC071906-1|AAH71906.1| 590|Homo sapiens keratin 5 (epidermolysi... 31 5.2
BC042132-1|AAH42132.1| 590|Homo sapiens keratin 5 (epidermolysi... 31 5.2
BC024292-1|AAH24292.1| 590|Homo sapiens keratin 5 (epidermolysi... 31 5.2
BC012561-1|AAH12561.1| 284|Homo sapiens penta-EF-hand domain co... 31 5.2
BC002773-1|AAH02773.1| 284|Homo sapiens penta-EF-hand domain co... 31 5.2
AY359011-1|AAQ89370.1| 284|Homo sapiens PEF protein. 31 5.2
AK001420-1|BAA91680.1| 284|Homo sapiens protein ( Homo sapiens ... 31 5.2
AC012665-1|AAX88967.1| 392|Homo sapiens unknown protein. 31 5.2
AB026628-1|BAA85163.1| 284|Homo sapiens peflin protein. 31 5.2
AB018357-1|BAA84922.1| 284|Homo sapiens ABP32 protein. 31 5.2
BC150212-1|AAI50213.1| 1479|Homo sapiens mannose receptor, C typ... 30 9.0
BC146647-1|AAI46648.1| 1479|Homo sapiens mannose receptor, C typ... 30 9.0
AF328962-1|AAK16717.1| 282|Homo sapiens HOXC12 protein. 30 9.0
AF134838-1|AAD30280.1| 1479|Homo sapiens endocytic receptor Endo... 30 9.0
AF107292-1|AAF14192.1| 1479|Homo sapiens urokinase receptor-asso... 30 9.0
AB014609-1|BAA31684.2| 1484|Homo sapiens KIAA0709 protein protein. 30 9.0
>S72869-1|AAC60637.1| 585|Homo sapiens H4(D10S170) protein.
Length = 585
Score = 34.7 bits (76), Expect = 0.42
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 750 FNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 595
FN +SA PR P+ + PSP+ + G+ + GF PP S +A
Sbjct: 337 FNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388
>BC064391-1|AAH64391.1| 474|Homo sapiens coiled-coil domain
containing 6 protein.
Length = 474
Score = 34.7 bits (76), Expect = 0.42
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 750 FNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 595
FN +SA PR P+ + PSP+ + G+ + GF PP S +A
Sbjct: 337 FNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388
>BC036757-1|AAH36757.2| 474|Homo sapiens coiled-coil domain
containing 6 protein.
Length = 474
Score = 34.7 bits (76), Expect = 0.42
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 750 FNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 595
FN +SA PR P+ + PSP+ + G+ + GF PP S +A
Sbjct: 337 FNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388
>U07664-1|AAB60647.1| 401|Homo sapiens HB9 homeobox protein
protein.
Length = 401
Score = 31.5 bits (68), Expect = 3.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 810 PQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPA 676
P P+SG GG G + GG S A+ +P A P L SP+
Sbjct: 34 PVPASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPS 78
>AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha 1
protein.
Length = 1806
Score = 31.5 bits (68), Expect = 3.9
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 720 PRANPGPVLFP--PSPAGDPSQTSGVVVGASGYGFVPPGSQG 601
P+ NPGPV FP P P G+P VG PG G
Sbjct: 1304 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPG 1345
>AK074126-1|BAB84952.1| 677|Homo sapiens FLJ00198 protein protein.
Length = 677
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = -2
Query: 798 SGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFV 619
SG G + G + GG + DPRA GP P P + G G +G
Sbjct: 578 SGPGAAPEAGGAGGGGAGGTAVPGGDPRAAAGPASGPQGPGTAAAAAGGRARGTAGAAPR 637
Query: 618 PPG 610
P G
Sbjct: 638 PQG 640
>AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin
receptor-interacting protein splice variant b protein.
Length = 1548
Score = 31.5 bits (68), Expect = 3.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 605 WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 706
W GG +P P AP+ + GS G GG+S GP
Sbjct: 437 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGP 467
>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
interacting protein splice variant a protein.
Length = 2161
Score = 31.5 bits (68), Expect = 3.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 605 WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 706
W GG +P P AP+ + GS G GG+S GP
Sbjct: 1050 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGP 1080
>L12699-1|AAA53502.2| 392|Homo sapiens engrailed protein protein.
Length = 392
Score = 31.1 bits (67), Expect = 5.2
Identities = 28/82 (34%), Positives = 32/82 (39%)
Frame = -2
Query: 837 LYCAPM*RLPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQT 658
L CAP P A G+S GN +AAA A + A PS T
Sbjct: 169 LLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAA-----AAAAKPSDT 223
Query: 657 SGVVVGASGYGFVPPGSQGKAY 592
G G SG G PG+QG Y
Sbjct: 224 GG---GGSGGGAGSPGAQGTKY 242
>CR542139-1|CAG46936.1| 284|Homo sapiens PEF protein.
Length = 284
Score = 31.1 bits (67), Expect = 5.2
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -2
Query: 804 PSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG 625
P GYGG A G Y A P +P P +FP G P G G YG
Sbjct: 42 PGGGYGGPAPGGP-------YGPPAGGGPYGHPNPGMFPSGTPGGPY--GGAAPGGP-YG 91
Query: 624 FVPPGSQG 601
PP S G
Sbjct: 92 QPPPSSYG 99
>BC071906-1|AAH71906.1| 590|Homo sapiens keratin 5 (epidermolysis
bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne t
protein.
Length = 590
Score = 31.1 bits (67), Expect = 5.2
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = -2
Query: 801 SSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGF 622
SSGYG + +G LGG L A G + S +G + G+ VG SG+
Sbjct: 499 SSGYGSGSGYGGGLGGG---LGGGLGGGLAGGGSGSYYSSSSGGVGLSGGLSVGGSGFSA 555
Query: 621 VPPGSQGKAYG 589
G +G
Sbjct: 556 SSGRGLGVGFG 566
>BC042132-1|AAH42132.1| 590|Homo sapiens keratin 5 (epidermolysis
bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne t
protein.
Length = 590
Score = 31.1 bits (67), Expect = 5.2
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = -2
Query: 801 SSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGF 622
SSGYG + +G LGG L A G + S +G + G+ VG SG+
Sbjct: 499 SSGYGSGSGYGGGLGGG---LGGGLGGGLAGGGSGSYYSSSSGGVGLSGGLSVGGSGFSA 555
Query: 621 VPPGSQGKAYG 589
G +G
Sbjct: 556 SSGRGLGVGFG 566
>BC024292-1|AAH24292.1| 590|Homo sapiens keratin 5 (epidermolysis
bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne t
protein.
Length = 590
Score = 31.1 bits (67), Expect = 5.2
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = -2
Query: 801 SSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGF 622
SSGYG + +G LGG L A G + S +G + G+ VG SG+
Sbjct: 499 SSGYGSGSGYGGGLGGG---LGGGLGGGLAGGGSGSYYSSSSGGVGLSGGLSVGGSGFSA 555
Query: 621 VPPGSQGKAYG 589
G +G
Sbjct: 556 SSGRGLGVGFG 566
>BC012561-1|AAH12561.1| 284|Homo sapiens penta-EF-hand domain
containing 1 protein.
Length = 284
Score = 31.1 bits (67), Expect = 5.2
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -2
Query: 804 PSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG 625
P GYGG A G Y A P +P P +FP G P G G YG
Sbjct: 42 PGGGYGGPAPGGP-------YGPPAGGGPYGHPNPGMFPSGTPGGPY--GGAAPGGP-YG 91
Query: 624 FVPPGSQG 601
PP S G
Sbjct: 92 QPPPSSYG 99
>BC002773-1|AAH02773.1| 284|Homo sapiens penta-EF-hand domain
containing 1 protein.
Length = 284
Score = 31.1 bits (67), Expect = 5.2
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -2
Query: 804 PSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG 625
P GYGG A G Y A P +P P +FP G P G G YG
Sbjct: 42 PGGGYGGPAPGGP-------YGPPAGGGPYGHPNPGMFPSGTPGGPY--GGAAPGGP-YG 91
Query: 624 FVPPGSQG 601
PP S G
Sbjct: 92 QPPPSSYG 99
>AY359011-1|AAQ89370.1| 284|Homo sapiens PEF protein.
Length = 284
Score = 31.1 bits (67), Expect = 5.2
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -2
Query: 804 PSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG 625
P GYGG A G Y A P +P P +FP G P G G YG
Sbjct: 42 PGGGYGGPAPGGP-------YGPPAGGGPYGHPNPGMFPSGTPGGPY--GGAAPGGP-YG 91
Query: 624 FVPPGSQG 601
PP S G
Sbjct: 92 QPPPSSYG 99
>AK001420-1|BAA91680.1| 284|Homo sapiens protein ( Homo sapiens
cDNA FLJ10558 fis, clone NT2RP2002595, weakly similar to
PROBABLE CALCIUM-BINDING PROTEIN ALG-2. ).
Length = 284
Score = 31.1 bits (67), Expect = 5.2
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -2
Query: 804 PSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG 625
P GYGG A G Y A P +P P +FP G P G G YG
Sbjct: 42 PGGGYGGPAPGGP-------YGPPAGGGPYGHPNPGMFPSGTPGGPY--GGAAPGGP-YG 91
Query: 624 FVPPGSQG 601
PP S G
Sbjct: 92 QPPPSSYG 99
>AC012665-1|AAX88967.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 31.1 bits (67), Expect = 5.2
Identities = 28/82 (34%), Positives = 32/82 (39%)
Frame = -2
Query: 837 LYCAPM*RLPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQT 658
L CAP P A G+S GN +AAA A + A PS T
Sbjct: 169 LLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAA-----AAAAKPSDT 223
Query: 657 SGVVVGASGYGFVPPGSQGKAY 592
G G SG G PG+QG Y
Sbjct: 224 GG---GGSGGGAGSPGAQGTKY 242
>AB026628-1|BAA85163.1| 284|Homo sapiens peflin protein.
Length = 284
Score = 31.1 bits (67), Expect = 5.2
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -2
Query: 804 PSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG 625
P GYGG A G Y A P +P P +FP G P G G YG
Sbjct: 42 PGGGYGGPAPGGP-------YGPPAGGGPYGHPNPGMFPSGTPGGPY--GGAAPGGP-YG 91
Query: 624 FVPPGSQG 601
PP S G
Sbjct: 92 QPPPSSYG 99
>AB018357-1|BAA84922.1| 284|Homo sapiens ABP32 protein.
Length = 284
Score = 31.1 bits (67), Expect = 5.2
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = -2
Query: 804 PSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG 625
P GYGG A G Y A P +P P +FP G P G G YG
Sbjct: 42 PGGGYGGPAPGGP-------YGPPAGGGPYGHPNPGMFPSGTPGGPY--GGAAPGGP-YG 91
Query: 624 FVPPGSQG 601
PP S G
Sbjct: 92 QPPPSSYG 99
>BC150212-1|AAI50213.1| 1479|Homo sapiens mannose receptor, C type 2
protein.
Length = 1479
Score = 30.3 bits (65), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 813 LPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSG 652
L PS+ + G D S ++ DP +P P PP+P + S +G
Sbjct: 1082 LHSPSAHFTGRWDDRSCTEETHGFICQKGTDPSLSPSPAALPPAPGTELSYLNG 1135
>BC146647-1|AAI46648.1| 1479|Homo sapiens mannose receptor, C type 2
protein.
Length = 1479
Score = 30.3 bits (65), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 813 LPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSG 652
L PS+ + G D S ++ DP +P P PP+P + S +G
Sbjct: 1082 LHSPSAHFTGRWDDRSCTEETHGFICQKGTDPSLSPSPAALPPAPGTELSYLNG 1135
>AF328962-1|AAK16717.1| 282|Homo sapiens HOXC12 protein.
Length = 282
Score = 30.3 bits (65), Expect = 9.0
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = -2
Query: 813 LPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGAS 634
L + G G + + + GG RDP A PG L P P+G P+ A
Sbjct: 85 LARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAG 144
Query: 633 GYGFVPPGSQG 601
G G G G
Sbjct: 145 GGGGDGGGGAG 155
>AF134838-1|AAD30280.1| 1479|Homo sapiens endocytic receptor Endo180
protein.
Length = 1479
Score = 30.3 bits (65), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 813 LPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSG 652
L PS+ + G D S ++ DP +P P PP+P + S +G
Sbjct: 1082 LHSPSAHFTGRWDDRSCTEETHGFICQKGTDPSLSPSPAALPPAPGTELSYLNG 1135
>AF107292-1|AAF14192.1| 1479|Homo sapiens urokinase
receptor-associated protein uPARAP protein.
Length = 1479
Score = 30.3 bits (65), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 813 LPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSG 652
L PS+ + G D S ++ DP +P P PP+P + S +G
Sbjct: 1082 LHSPSAHFTGRWDDRSCTEETHGFICQKGTDPSLSPSPAALPPAPGTELSYLNG 1135
>AB014609-1|BAA31684.2| 1484|Homo sapiens KIAA0709 protein protein.
Length = 1484
Score = 30.3 bits (65), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 813 LPQPSSGYGGFADFGSSLGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSG 652
L PS+ + G D S ++ DP +P P PP+P + S +G
Sbjct: 1087 LHSPSAHFTGRWDDRSCTEETHGFICQKGTDPSLSPSPAALPPAPGTELSYLNG 1140
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,552,497
Number of Sequences: 237096
Number of extensions: 2626057
Number of successful extensions: 10667
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10621
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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