Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16l08
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    37   2e-04
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.5  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   8.2  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = -3

Query: 413 KDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYP---MGPLELADYVGLD 243
           ++  GFV+NR+    + EA RL   G  +A+D+D  M  G G     +G  E A      
Sbjct: 3   REIDGFVLNRIQYAILNEAWRLVADGILNAKDVDAVMSEGLGMRYAFLGAFEAAHLNAEG 62

Query: 242 TNKFILDGWHKKFPDQQLFKPIPLLEKLVAE 150
             K+     +  +     F P+P  E  +AE
Sbjct: 63  MKKYCETYKNSIYDVSMTFGPVPKFEGEMAE 93


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 398 FVVNRLLVPYICEAIRLYERGDASARDIDI 309
           FVV  L++P  CEA+   +R    AR  D+
Sbjct: 19  FVVILLIIPSKCEAVS-NDRQSLEARSADL 47


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 234 VYLGWLAQEVSGSATLQTYTLARKAC 157
           V+L W A  + G  T  TY +   AC
Sbjct: 334 VFLSWNAPHMLGGRTDTTYRVVCDAC 359


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 139 PNFPSATSFSSKGIGLKSC*SGNFLCQPSK 228
           PN P    F++K I      + +++CQ SK
Sbjct: 598 PNLPKLALFATKDIKQNEEITFDYMCQSSK 627


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 845 KSIGTNLSRVAKKMYKDNPQE 783
           +SI  N + + KK+ +DNP E
Sbjct: 588 RSITRNATALIKKLCRDNPAE 608


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 311 IAMKLGAGYPMGPLELAD 258
           +A +LG+G PMG   L D
Sbjct: 2   LAFQLGSGTPMGAKYLMD 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,245
Number of Sequences: 438
Number of extensions: 5174
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)