Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16l06
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 30 0.32
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 1.7
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 1.7
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 27 1.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.3
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 4.0
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 26 4.0
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 26 4.0
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 7.0
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 25 7.0
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 25 7.0
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.2
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 398 SPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNGLL 288
S +S Y+TLTY K +D +F T +G+ S N L
Sbjct: 107 SKNSSYETLTYSAKDSSDDVFTETNSGFRSSNQNSSL 143
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 518 LVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLTLSPDSIYDTL 372
LV ++ D+P I I N + PEW + Y+ SPD +YD L
Sbjct: 619 LVQRALELYDKPA-DIKRVIVHSNLLNPEWLMN--YFSRFSPDEVYDYL 664
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 541 GSTITPASWCLPTSKFLIALLYLYSLTSLWEIT 443
GST+ + W LP S +++A YSL LW T
Sbjct: 321 GSTLVGSVWVLPRSSWVLA--SFYSLHFLWLCT 351
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 497 ISDRPTIPILPDITVGNYIPPEWPQSASYW-LTLSPDSIYDTLTYLQKRYNDPI 339
+S P + L +T G Y P ++ T S D +YD L K+Y D +
Sbjct: 227 VSSIPLLDELNQMTFGKYQQSGLPLGIIFYNSTESRDELYDVFQPLAKKYQDTL 280
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 533 HYTGFLVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLT-LSPDSIYDTLTY 366
+ + L ++N +IS RP + + V YIP W +T LSP I L +
Sbjct: 3729 YLSSLLETSNAKISSRPNVLMPNQPEVKQYIPNVWNDVLKKLITILSPKVIITKLDF 3785
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 142 KPKRSVYPSNHSKLSIRLQAM*PLSLIPASR 234
KPK +V+PSN + S A P+ IP R
Sbjct: 294 KPKLAVFPSNQATASTLQLAPPPVQAIPTLR 324
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -2
Query: 422 SASYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNGLLDDDRIRYYRAALESV 243
SAS+ + P +Y+ + L N NG+ PP N + RI Y ++
Sbjct: 109 SASFSTSQHPSQVYNDGSTLNSN-NTTQQLNNNNGFQPPPQNPGISKSRIAQYHQPSQTY 167
Query: 242 LDCLDA 225
D +D+
Sbjct: 168 DDTVDS 173
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 455 VGNYIPPEWPQSASYWLTLSP 393
+G YI EW +SA W T+ P
Sbjct: 21 IGLYINGEWHKSAETWETVDP 41
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 444 VISHSDVREYRYSRAIRNLLVGR 512
V S DV EY+ RA+ N LVGR
Sbjct: 329 VPSRQDVEEYQNLRAVVNELVGR 351
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 77 KEILRSRVIDHDYEP 33
KE+L+ VIDHD EP
Sbjct: 1076 KELLQEVVIDHDLEP 1090
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 599 IPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILP 465
+PEF + + + + + TG + Q+ DRP +P+LP
Sbjct: 150 LPEFHNPNHNVYKSQAYY----ELTGAWLVVLRQLEDRPVVPLLP 190
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 159 VSFQPFEVIHQTPGHVTFE 215
+SF P +H+TPG TFE
Sbjct: 370 LSFAPSVQMHKTPGDFTFE 388
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 411 IRSRLWPFGGDVISHSDV 464
+++R+W G DV+ H DV
Sbjct: 928 VKARIWRSGDDVVFHYDV 945
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 533 HYTGFLVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLTLSPDSIY 381
+Y +L + + +PT P + + N +PP S+++ + SP S +
Sbjct: 493 NYQSYLTNKARNAT-QPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAF 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,635
Number of Sequences: 5004
Number of extensions: 60448
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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