Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16l03
(865 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y17849-1|CAA76892.1| 358|Homo sapiens ganglioside-induced diffe... 86 1e-16
BC024939-1|AAH24939.1| 290|Homo sapiens ganglioside-induced dif... 86 1e-16
BC009014-1|AAH09014.1| 367|Homo sapiens ganglioside-induced dif... 66 1e-10
BC000199-1|AAH00199.1| 367|Homo sapiens ganglioside-induced dif... 66 1e-10
AL117382-2|CAI23110.1| 367|Homo sapiens ganglioside-induced dif... 66 1e-10
AL117382-1|CAI23109.1| 288|Homo sapiens ganglioside-induced dif... 66 1e-10
AL035462-2|CAI23551.1| 367|Homo sapiens ganglioside-induced dif... 66 1e-10
AL035462-1|CAI23550.1| 288|Homo sapiens ganglioside-induced dif... 66 1e-10
AK056251-1|BAB71128.1| 367|Homo sapiens rotein 1. protein. 66 1e-10
AF277566-1|AAM73515.1| 367|Homo sapiens ganglioside-induced dif... 66 1e-10
AL117382-4|CAI23112.1| 123|Homo sapiens ganglioside-induced dif... 65 3e-10
AL035462-5|CAI23553.1| 123|Homo sapiens ganglioside-induced dif... 65 3e-10
AF123765-1|AAP97244.1| 368|Homo sapiens ganglioside-induced dif... 50 1e-05
AF123764-1|AAP97243.1| 347|Homo sapiens ganglioside-induced dif... 50 1e-05
X63679-1|CAA45218.1| 374|Homo sapiens TRAM protein protein. 31 4.1
CR541739-1|CAG46539.1| 374|Homo sapiens TRAM1 protein. 31 4.1
CR541654-1|CAG46455.1| 374|Homo sapiens TRAM1 protein. 31 4.1
BT007359-1|AAP36023.1| 374|Homo sapiens translocating chain-ass... 31 4.1
BC037738-1|AAH37738.1| 374|Homo sapiens translocation associate... 31 4.1
BC000687-1|AAH00687.1| 374|Homo sapiens translocation associate... 31 4.1
U55853-1|AAB58419.1| 696|Homo sapiens 130 kD Golgi-localized ph... 31 5.4
>Y17849-1|CAA76892.1| 358|Homo sapiens ganglioside-induced
differentiation associated protein 1 protein.
Length = 358
Score = 86.2 bits (204), Expect = 1e-16
Identities = 50/130 (38%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Frame = -1
Query: 838 SSSQNLRKXADENPKAKHILLYKAEIQDRKHELLSNEE-EYLK-ILNIVDQVLNQIEEQL 665
++ L+K A+ENP + Y A+ + K +LL ++ +YLK IL+ +++VL+Q+E +L
Sbjct: 166 NTESELKKLAEENPDLQEA--YIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQVETEL 223
Query: 664 KLQPVGN-------WLCCENFSIADINLAVLLQRLWELGLETRFWSNGKRPLIESYFERV 506
+ + WLC E+F++AD++LAV L RL LG R W NGKRP +E+Y+ERV
Sbjct: 224 QRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERV 283
Query: 505 RQRESFKNTI 476
+R++F +
Sbjct: 284 LKRKTFNKVL 293
>BC024939-1|AAH24939.1| 290|Homo sapiens ganglioside-induced
differentiation-associated protein 1 protein.
Length = 290
Score = 86.2 bits (204), Expect = 1e-16
Identities = 50/130 (38%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Frame = -1
Query: 838 SSSQNLRKXADENPKAKHILLYKAEIQDRKHELLSNEE-EYLK-ILNIVDQVLNQIEEQL 665
++ L+K A+ENP + Y A+ + K +LL ++ +YLK IL+ +++VL+Q+E +L
Sbjct: 98 NTESELKKLAEENPDLQEA--YIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQVETEL 155
Query: 664 KLQPVGN-------WLCCENFSIADINLAVLLQRLWELGLETRFWSNGKRPLIESYFERV 506
+ + WLC E+F++AD++LAV L RL LG R W NGKRP +E+Y+ERV
Sbjct: 156 QRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERV 215
Query: 505 RQRESFKNTI 476
+R++F +
Sbjct: 216 LKRKTFNKVL 225
>BC009014-1|AAH09014.1| 367|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 367
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 222 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 281
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 282 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 318
>BC000199-1|AAH00199.1| 367|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 367
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 222 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 281
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 282 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 318
>AL117382-2|CAI23110.1| 367|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 367
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 222 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 281
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 282 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 318
>AL117382-1|CAI23109.1| 288|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 288
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 164 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 223
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 224 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 260
>AL035462-2|CAI23551.1| 367|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 367
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 222 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 281
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 282 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 318
>AL035462-1|CAI23550.1| 288|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 288
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 164 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 223
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 224 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 260
>AK056251-1|BAB71128.1| 367|Homo sapiens rotein 1. protein.
Length = 367
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 222 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 281
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 282 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 318
>AF277566-1|AAM73515.1| 367|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 367
Score = 66.5 bits (155), Expect = 1e-10
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 222 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 281
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFKNTIPNL 467
LGL ++W +G RP ++S+FERV++R +F+ + ++
Sbjct: 282 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDI 318
>AL117382-4|CAI23112.1| 123|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 123
Score = 65.3 bits (152), Expect = 3e-10
Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 8/91 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 4 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 63
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFK 485
LGL ++W +G RP ++S+FERV++R +F+
Sbjct: 64 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFR 94
>AL035462-5|CAI23553.1| 123|Homo sapiens ganglioside-induced
differentiation-associated protein 1-like 1 protein.
Length = 123
Score = 65.3 bits (152), Expect = 3e-10
Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 8/91 (8%)
Frame = -1
Query: 733 NEEEYLK-ILNIVDQVLNQIEEQLKLQPVGN-------WLCCENFSIADINLAVLLQRLW 578
++ YLK IL + VL+QIE +L+ + + N WLC F++AD+ L L RL
Sbjct: 4 DDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWLCGCAFTLADVLLGATLHRLK 63
Query: 577 ELGLETRFWSNGKRPLIESYFERVRQRESFK 485
LGL ++W +G RP ++S+FERV++R +F+
Sbjct: 64 FLGLSKKYWEDGSRPNLQSFFERVQRRFAFR 94
>AF123765-1|AAP97244.1| 368|Homo sapiens ganglioside-induced
differentiation associated protein 2 protein.
Length = 368
Score = 50.0 bits (114), Expect = 1e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = -1
Query: 676 EEQLKLQPVGNWLCCENFSIADINLAVLLQRLWELGLETRFWSNGKRPLIESYFERVRQR 497
E +++ V WLC +AD+ L L RL LG W +G RP ++S+FERV++R
Sbjct: 253 ERGAEMRAVALWLCLH---LADVLLGATLHRLKFLGRPRNTWEDGSRPNLQSFFERVQRR 309
Query: 496 ESFKNTIPNL 467
+F+ + ++
Sbjct: 310 FAFRKVLGDI 319
>AF123764-1|AAP97243.1| 347|Homo sapiens ganglioside-induced
differentiation associated protein 1 protein.
Length = 347
Score = 50.0 bits (114), Expect = 1e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = -1
Query: 676 EEQLKLQPVGNWLCCENFSIADINLAVLLQRLWELGLETRFWSNGKRPLIESYFERVRQR 497
E +++ V WLC +AD+ L L RL LG W +G RP ++S+FERV++R
Sbjct: 232 ERGAEMRAVALWLCLH---LADVLLGATLHRLKFLGRPRNTWEDGSRPNLQSFFERVQRR 288
Query: 496 ESFKNTIPNL 467
+F+ + ++
Sbjct: 289 FAFRKVLGDI 298
>X63679-1|CAA45218.1| 374|Homo sapiens TRAM protein protein.
Length = 374
Score = 31.5 bits (68), Expect = 4.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -2
Query: 255 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 100
LN L L Y+V +F+IS+L + K KGF +LF++G LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271
>CR541739-1|CAG46539.1| 374|Homo sapiens TRAM1 protein.
Length = 374
Score = 31.5 bits (68), Expect = 4.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -2
Query: 255 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 100
LN L L Y+V +F+IS+L + K KGF +LF++G LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271
>CR541654-1|CAG46455.1| 374|Homo sapiens TRAM1 protein.
Length = 374
Score = 31.5 bits (68), Expect = 4.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -2
Query: 255 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 100
LN L L Y+V +F+IS+L + K KGF +LF++G LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271
>BT007359-1|AAP36023.1| 374|Homo sapiens translocating
chain-associating membrane protein protein.
Length = 374
Score = 31.5 bits (68), Expect = 4.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -2
Query: 255 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 100
LN L L Y+V +F+IS+L + K KGF +LF++G LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271
>BC037738-1|AAH37738.1| 374|Homo sapiens translocation associated
membrane protein 1 protein.
Length = 374
Score = 31.5 bits (68), Expect = 4.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -2
Query: 255 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 100
LN L L Y+V +F+IS+L + K KGF +LF++G LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271
>BC000687-1|AAH00687.1| 374|Homo sapiens translocation associated
membrane protein 1 protein.
Length = 374
Score = 31.5 bits (68), Expect = 4.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -2
Query: 255 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 100
LN L L Y+V +F+IS+L + K KGF +LF++G LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271
>U55853-1|AAB58419.1| 696|Homo sapiens 130 kD Golgi-localized
phosphoprotein protein.
Length = 696
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 829 QNLRKXADENPKAKH-ILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLNQIEEQLKLQ 656
++L+K E+ KAK L+YK E Q+ ++ + LN+ Q+L E+LK Q
Sbjct: 73 KSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQMLKSQHEELKKQ 131
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,003,563
Number of Sequences: 237096
Number of extensions: 2103761
Number of successful extensions: 5152
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5140
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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