Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16l02
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 120 3e-28
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 108 8e-25
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 103 2e-23
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 83 5e-17
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 82 1e-16
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 62 9e-11
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 31 0.15
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 28 1.4
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 28 1.4
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 27 2.4
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.1
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 7.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 7.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 120 bits (288), Expect = 3e-28
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 2/196 (1%)
Frame = -2
Query: 798 EAGGVCIADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNGHPVAAVITTPEIAKSF 619
E G + I DE Q G GR G+ M++FE +VPDI+T+ K +G G +AAVIT+ EI K
Sbjct: 243 ERGMLLIIDEAQTGIGRTGS-MFSFEHHGIVPDILTLSKSLGAGTALAAVITSEEIEKVC 301
Query: 618 SDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGD 439
D G ++ T+ +P+ AI + VL V++ +NL+E+A G L S LK KH L+ D
Sbjct: 302 YDNGFVFYTTHASDPLPAAIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVD 361
Query: 438 VRGRGLFVGVELVTDRETRTPATAEAKHVVNRMRE--ENILISRDGPDSNVLKFKPPMVF 265
VRG GL G+E+ + + P+ + ++ E N I V + PP+
Sbjct: 362 VRGLGLLQGIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVHLRGIGGVFRIAPPLTV 421
Query: 264 TTQDADRLVETLDRVL 217
T ++ + +E D L
Sbjct: 422 TDEEIHKAIEIFDSAL 437
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 108 bits (260), Expect = 8e-25
Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 11/203 (5%)
Frame = -2
Query: 792 GGVCIADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNGH-PVAAVITTPEIAKSFS 616
G + DEV G GR GT M A+E + V PDI ++ K +G G+ P++ + I F
Sbjct: 250 GVIFYLDEVMSGIGRTGT-MHAWEQEGVTPDIQSIAKCLGGGYQPISGALVGHRIMNVFE 308
Query: 615 --DTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVG 442
D + F TY +P++C+ A AV ++ ++L+ERA+ +G +L + + H VG
Sbjct: 309 QKDAAMAGFFTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLSEKLHETFDSHPNVG 368
Query: 441 DVRGRGLFVGVELVTDRETRT--PATAEAKHVVNRMR-EENILI-----SRDGPDSNVLK 286
++RGRGLF G+E+V D+ T+ P + + N++ E + + + DG + +
Sbjct: 369 NIRGRGLFWGLEIVKDKATKECFPPEYKVGSLANKIGCEHGVFVYPGMGTIDGTRGDHVL 428
Query: 285 FKPPMVFTTQDADRLVETLDRVL 217
PP + T + D LVE L + +
Sbjct: 429 LAPPYIITREQIDELVEALSKTI 451
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 103 bits (248), Expect = 2e-23
Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 1/192 (0%)
Frame = -2
Query: 780 IADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGV 604
IADEVQ G R G M E +V PD+V +GK + G +PV+AV+++ EI +F + G
Sbjct: 244 IADEVQTGVARTGK-MLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNF-EPGT 301
Query: 603 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 424
+ +TYGGNP+ A++ A L+V++EE L ERA+ +G R ++ K +V VRGRG
Sbjct: 302 -HGSTYGGNPLGAAVSIAALEVVKEEKLTERAAVLGEKF--RTALIECKSPIVQKVRGRG 358
Query: 423 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 244
L V V D TA ++ MR +L N+++F PP+V T +D +
Sbjct: 359 LLNAV--VIDESKTNGRTAWDLCLI--MRSRGVLAK--PTHGNIIRFSPPLVITEEDLMK 412
Query: 243 LVETLDRVLGEL 208
+E + + L +L
Sbjct: 413 GIEVIKKSLNDL 424
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 83.0 bits (196), Expect = 5e-17
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 8/200 (4%)
Frame = -2
Query: 780 IADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNGH-PVAAVITTPEI---AKSFSD 613
+ DE+Q G GR G WA E ++++PD + K G P A I T E+ A + +
Sbjct: 274 VLDEIQTGCGRTGK-FWACEYENIIPDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLE 332
Query: 612 TGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDV 436
T + TY N + A A +D I + +LL R ++G + R L+ K ++ DV
Sbjct: 333 TAFLHTATYQENTLGLAAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDV 392
Query: 435 RGRGLFVGVELVTDRETRTPATAE--AKHVVNRMREE-NILISRDGPDSNVLKFKPPMVF 265
RGRG+ VG+E E+ E A +VN + + ++ + + +V +F PP+
Sbjct: 393 RGRGMIVGIEFYPIPESVQEEFGEYYATPIVNDLADTYHVQVYCSLNNPSVFRFLPPLTI 452
Query: 264 TTQDADRLVETLDRVLGELD 205
D D + ++ + + D
Sbjct: 453 PEADLDEGLSAVESAVAKFD 472
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 81.8 bits (193), Expect = 1e-16
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Frame = -2
Query: 798 EAGGVCIADEVQVGFGRVGTHMWAFE-TQDVV-PDIVTMGKPMGNGHPVAAVITTPEIAK 625
+ G I DE+Q G GR G +WA +DV PDI+T+ KP+ NG P+ A I + +IA
Sbjct: 255 KVGASLIYDEIQCGLGRSGD-LWAHSIVKDVASPDIITVAKPLANGLPIGATIVSSKIAA 313
Query: 624 SFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RL 448
E+ +T+GGNPV+C + ++ + +L+ + L SR +D K+ L
Sbjct: 314 EIHPG--EHGSTFGGNPVACRVGTFCVNELGSSKILQNVRKQHKALTSRFDDFVAKYPNL 371
Query: 447 VGDVRGRGLFVGVE 406
+ GRGL +G++
Sbjct: 372 IRGYAGRGLLLGLQ 385
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 62.1 bits (144), Expect = 9e-11
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Frame = -2
Query: 780 IADEVQVGFGRVGTHMWAFETQDVV--PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTG 607
I DEVQ G G GT +WA E ++ PD+VT K AA I ++A
Sbjct: 300 IVDEVQTGVGSTGT-LWAHEQWNLPYPPDMVTFSKKFQ-----AAGIFYHDLA--LRPHA 351
Query: 606 VEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRG 430
++FNT+ G+P + +L I++++LL VG+ L + E+L KH + ++RG
Sbjct: 352 YQHFNTWMGDPFRAVQSRYILQEIQDKDLLNNVKSVGDFLYAGLEELARKHPGKINNLRG 411
Query: 429 RGLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDA 250
+G G + D E +PA + R+ NI G ++ +P +VF A
Sbjct: 412 KG--KGTFIAWDCE--SPAARDKFCADMRINGVNI----GGCGVAAIRLRPMLVFQKHHA 463
Query: 249 DRLVETLDRVL 217
L++ +D ++
Sbjct: 464 QILLKKIDELI 474
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 494 TIYSVGVKI*SINIDSSAMSAVGVCL*ASNLSPTGKPEL 378
+IY + I S NIDSS V + AS +SP+ P+L
Sbjct: 166 SIYEFNIGIPSSNIDSSQFLPVSRAIAASEISPSSSPQL 204
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = -2
Query: 705 PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDT---GVEYFNTYGGNPVSCAIANAVLDVI 535
PD+ T+GK +G G P A +I F + + T+ + ++ L +
Sbjct: 263 PDLTTLGKYLGGGLPFGAFGGRADIMSCFDPRLPGSLSHSGTFNNDTLTLTAGYVGLTEL 322
Query: 534 EEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGV 409
++R + +G+ L E H ++ + G G + +
Sbjct: 323 YTPEAVKRLNALGDGLRKDIESYCHNTKM--SITGLGSIMNI 362
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 633 IAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENL 520
I K++ DT E+ GNPV I N++LD+ + ENL
Sbjct: 532 IEKTYVDTVDEF-----GNPVKVLIDNSMLDLTDMENL 564
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = -2
Query: 297 NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIK 121
NV K ++ T+Q R+ ETLD L + D+T I +E TPI T P ++ I+
Sbjct: 50 NVRKTYCGLIVTSQ---RVSETLDEALKQEDETERQKILME---TPIFTVGPATDDSIR 102
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 240 VETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIKSSVQKAIKT**MFYYCNSIN 61
V T+ +L L D+RI KLE L T + + ++ +K+ + +K + C N
Sbjct: 162 VTTIPALLRALQDSRIDREKLEALATFLASASIDEKVYVKNCKKDLLKNFVFEHSCRKAN 221
Query: 60 KL 55
+L
Sbjct: 222 EL 223
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -2
Query: 543 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAE 364
+++ +ENL+E ++ HL S E +K K + + R + +E + + T+ A
Sbjct: 1325 ELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQ-SKIEQLELKNTKLAAAWR 1383
Query: 363 AKH--VVNRMREEN 328
K+ VVN+ E++
Sbjct: 1384 TKYEQVVNKSLEKH 1397
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 264 TTQDADR--LVETLDRVLGELDD-TRISNIKLEVLVTPI 157
T +D +R LV+ +DR+L +LDD R K+ V++ P+
Sbjct: 427 TLEDQERHLLVKVIDRILYKLDDLVRPFTHKILVVIEPL 465
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = -2
Query: 669 GHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNH 490
GH AV++ PEI +DT F +Y + + + V +L RV
Sbjct: 810 GHYDDAVLSVPEIFIQITDTSTS-FGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKA 868
Query: 489 LLSRCEDLKHKHRLV 445
+ RC++L H ++
Sbjct: 869 V--RCDELMHLKNVI 881
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +2
Query: 167 TSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLINIFSSLIL 346
+ST++L + V+SNS +L+ STS S + T + T L+ ++ SS +
Sbjct: 828 SSTTSLAANKGVNSNSITSLNLESTS-SVTSTAYTTDSVTSTTALTSQGPSSSVVSSSLS 886
Query: 347 LTTCFASAV 373
TT ++++
Sbjct: 887 STTSLSTSI 895
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,846
Number of Sequences: 5004
Number of extensions: 73755
Number of successful extensions: 224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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