Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16l02
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 192 3e-49
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 182 4e-46
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 91 1e-18
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 91 1e-18
Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 33 0.18
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 31 0.73
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 31 0.97
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 31 1.3
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81139-3|CAB03482.1| 520|Caenorhabditis elegans Hypothetical pr... 30 2.2
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 30 2.2
U28928-11|AAA68342.3| 824|Caenorhabditis elegans Hypothetical p... 29 5.2
AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical ... 28 6.8
AL132876-16|CAD21672.2| 406|Caenorhabditis elegans Hypothetical... 28 9.0
AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRN... 28 9.0
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 192 bits (468), Expect = 3e-49
Identities = 97/200 (48%), Positives = 128/200 (64%), Gaps = 3/200 (1%)
Frame = -2
Query: 807 YVHEAGGVCIADEVQVGFGRVGTHMWAFETQD--VVPDIVTMGKPMGNGHPVAAVITTPE 634
+V GG+ I DEVQ GFGR+G WA + D +PDIVTMGKPMGNG PV+AV T E
Sbjct: 264 HVRNHGGLMIIDEVQTGFGRIGRKYWAHQLYDDGFLPDIVTMGKPMGNGFPVSAVATRKE 323
Query: 633 IAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH 454
IA + V YFNTYGGNPV+CA +V+ V+++ENLLE + ++G L DL+ KH
Sbjct: 324 IADALGGE-VGYFNTYGGNPVACAAVISVMKVVKDENLLEHSQQMGEKLEVALRDLQKKH 382
Query: 453 RLVGDVRGRGLFVGVELVTDRETRTPATAEAKHVVNRMREE-NILISRDGPDSNVLKFKP 277
+GD+RG GLF G++LV DR TR P A + +R+ IL++ DGP +N+LK KP
Sbjct: 383 ECIGDIRGVGLFWGIDLVKDRNTREPDQKLAIATILALRKSYGILLNADGPHTNILKIKP 442
Query: 276 PMVFTTQDADRLVETLDRVL 217
P+ F + V LD+VL
Sbjct: 443 PLCFNENNILETVTALDQVL 462
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 182 bits (442), Expect = 4e-46
Identities = 88/192 (45%), Positives = 127/192 (66%)
Frame = -2
Query: 804 VHEAGGVCIADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNGHPVAAVITTPEIAK 625
V + GG+ IADEVQ GFGR+G+H W FE+QD +PD+VTM K +GNG P+ AV+T+ EIA
Sbjct: 250 VQKRGGLAIADEVQTGFGRLGSHFWGFESQDALPDMVTMAKGIGNGFPLGAVVTSKEIAD 309
Query: 624 SFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLV 445
SF+ + YFNTYGGNP++ + AVL+VIEEE L E ++ VG++ L + + +
Sbjct: 310 SFNKS--LYFNTYGGNPLASVVGKAVLEVIEEEKLQENSAVVGDYFLKQLAAI--DDATI 365
Query: 444 GDVRGRGLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVF 265
GDVRG+GL +GVEL+ D + + A A+ + + + +LI + G NVL+ KPPM
Sbjct: 366 GDVRGKGLMIGVELI-DEQGKPLAAAKTAAIFEDTKNQGLLIGKGGIHGNVLRIKPPMCI 424
Query: 264 TTQDADRLVETL 229
T +D D V+ +
Sbjct: 425 TKKDVDFAVDII 436
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 90.6 bits (215), Expect = 1e-18
Identities = 57/185 (30%), Positives = 103/185 (55%), Gaps = 1/185 (0%)
Frame = -2
Query: 780 IADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGV 604
I DEVQ G GR G + A +V PDIV +GK + G +PV+AV+ + +
Sbjct: 242 ITDEVQSGLGRSGK-LLAHYHDNVRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPG-- 298
Query: 603 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 424
E+ +TYGGNP++C +A A L++++EE L+E ++ +G+ L+S+ + L +V VRG+G
Sbjct: 299 EHGSTYGGNPLACKVAIAALEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKG 356
Query: 423 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 244
LF + V +++ +A V +++E +L D +++F PP+ + ++
Sbjct: 357 LFCAI--VINKK------YDAWKVCLKLKENGLLAKNTHGD--IIRFAPPLCINKEQVEQ 406
Query: 243 LVETL 229
+ +
Sbjct: 407 AADII 411
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 90.6 bits (215), Expect = 1e-18
Identities = 57/185 (30%), Positives = 103/185 (55%), Gaps = 1/185 (0%)
Frame = -2
Query: 780 IADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGV 604
I DEVQ G GR G + A +V PDIV +GK + G +PV+AV+ + +
Sbjct: 177 ITDEVQSGLGRSGK-LLAHYHDNVRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPG-- 233
Query: 603 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 424
E+ +TYGGNP++C +A A L++++EE L+E ++ +G+ L+S+ + L +V VRG+G
Sbjct: 234 EHGSTYGGNPLACKVAIAALEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKG 291
Query: 423 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 244
LF + V +++ +A V +++E +L D +++F PP+ + ++
Sbjct: 292 LFCAI--VINKK------YDAWKVCLKLKENGLLAKNTHGD--IIRFAPPLCINKEQVEQ 341
Query: 243 LVETL 229
+ +
Sbjct: 342 AADII 346
>Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical
protein K04D7.3 protein.
Length = 483
Score = 50.8 bits (116), Expect = 1e-06
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 4/196 (2%)
Frame = -2
Query: 792 GGVCIADEVQVGFGRVGTHMWAFETQDVV--PDIVTMGKPM-GNGHPVAAVITTPEIAKS 622
G V I DEVQ G G G +WA + ++ PD+VT K + G+ + E +
Sbjct: 304 GIVFIVDEVQTGGGATGD-IWAHDHWNLSSPPDMVTFSKKLLTGGYFYGEHLRVKEAYR- 361
Query: 621 FSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLK-HKHRLV 445
+NT+ G+P + ++VI+ + L+E++ VG R +L+ +
Sbjct: 362 -------IYNTWMGDPTKLLLLEKAVEVIKRDGLIEQSREVGAEFQKRLGELQASSGGKL 414
Query: 444 GDVRGRGLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVF 265
RGRG F V+ P+ + V+ + G S L+F+P +V+
Sbjct: 415 DQARGRGTFAAVDF--------PSGSLRDKFVDLAISNGLHCGGCGDRS--LRFRPSLVY 464
Query: 264 TTQDADRLVETLDRVL 217
T + D + LD+ L
Sbjct: 465 TKKHLDLTFDLLDKTL 480
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
protein D2045.2 protein.
Length = 1792
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = -2
Query: 675 GNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIA--NAVLDVIEEENLLERASR 502
G+ HP+ + + +AK F D EY G VSC L+ EEE +
Sbjct: 397 GSRHPILVLNDSDVVAKMFEDLSTEYQEDIAGAIVSCLTTWLPLFLESTEEELRAKLREV 456
Query: 501 VGNHLLS-----RCEDLKHKHRLVGD 439
+ H+ S R LK+ L+G+
Sbjct: 457 ISEHIRSDFPNCRLAALKYAEALIGE 482
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 31.5 bits (68), Expect = 0.73
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 637 GGGNYSGHRMSITHRFAHSDYVGNNVLSFK---GPHVCADTTEPYLNLIGDTHTT 792
GGG SG + R + DY + L F P VC EPY N I THTT
Sbjct: 140 GGGTGSGFTSLLMERLS-VDYGKKSKLEFSIYPAPQVCTAVVEPY-NSILTTHTT 192
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 31.1 bits (67), Expect = 0.97
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 594 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 424
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 423 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 244
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 243 LVETLD 226
E +D
Sbjct: 438 -TENID 442
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 31.1 bits (67), Expect = 0.97
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 594 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 424
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 423 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 244
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 243 LVETLD 226
E +D
Sbjct: 438 -TENID 442
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 31.1 bits (67), Expect = 0.97
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 594 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 424
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 423 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 244
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 243 LVETLD 226
E +D
Sbjct: 438 -TENID 442
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 31.1 bits (67), Expect = 0.97
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 594 NTYGGNPVSCAIA---NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 424
++ GGN + IA + D +E N ++ A+R + +++G++R R
Sbjct: 321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRI 380
Query: 423 LFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADR 244
+ EL+ ++ R + VVN EN+ ++ + N L+F+ + T D R
Sbjct: 381 AALEAELLEFKQGRRTVDVDGHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR 437
Query: 243 LVETLD 226
E +D
Sbjct: 438 -TENID 442
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/106 (22%), Positives = 47/106 (44%)
Frame = -2
Query: 543 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAE 364
D +E N ++ A+R + +++G++R R + EL+ ++ R +
Sbjct: 345 DFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRIAALEAELLEFKQGRRTVDVD 404
Query: 363 AKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLD 226
VVN EN+ ++ + N L+F+ + T D R E +D
Sbjct: 405 GHEVVNDQYHENVYLT---SEVNHLRFRVKALNETLDILR-TENID 446
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 575 GLPPYVLKYSTPV--SEKLLAISGVVITAATGCPLPIGLPIVTMSGTTS*VSKAHMCVPT 748
G PP LK T + + AI I++ T P P+ P VT+ + + H T
Sbjct: 1398 GTPPSPLKPKTKLGLTSHPSAIPPWAISSKTLAP-PVAPPTVTVPSNIAPSTTGHQSQQT 1456
Query: 749 RPNPT*TSSAIHTPP 793
RP PT I TPP
Sbjct: 1457 RPTPTTHRPGI-TPP 1470
>Z81139-3|CAB03482.1| 520|Caenorhabditis elegans Hypothetical
protein W05H5.3 protein.
Length = 520
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +2
Query: 155 LIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLN------FNTLLSGPSR 316
LI T + IL S + L R+++SLS + + G L F + + +
Sbjct: 293 LIRKKRTKKISVFILKYSEKTEKLPRIASSLSYTFPIVPRGWLRRAVYWAFPPMRNDDQK 352
Query: 317 LINIFSSLILLTTCFASAVAG 379
+ +FS L +LT CFA G
Sbjct: 353 AVRLFSFLQILTACFAGFAHG 373
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/92 (26%), Positives = 45/92 (48%)
Frame = -2
Query: 372 TAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRI 193
T + K +NR ++ N++I + K K ++ A++L ETL ++ +
Sbjct: 780 TKKGKKFINRWKKANVIILSEDSSEIDEKTKAADSNVSEIAEKLEETL-KISSQ------ 832
Query: 192 SNIKLEVLVTPINTEVPKKENVIKSSVQKAIK 97
NI + V P++TE+ K E + K S + +K
Sbjct: 833 KNIDVAVTSMPVSTEI-KPEPITKLSNEAPVK 863
>U28928-11|AAA68342.3| 824|Caenorhabditis elegans Hypothetical
protein C44B7.11 protein.
Length = 824
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 107 FCTELLMTFSFFGTSVLIGVTSTSNLIFDILV--SSNSPKTLSRVSTSLSASCVVNTMGG 280
F T L + SF G ++ I T IF ++ SS +P+ + SA C+V ++GG
Sbjct: 473 FNTILTLILSFPGCAMAIYTTEMLLSIFIPIMGRSSYNPEPAVSFFVAFSAGCIVLSLGG 532
Query: 281 L 283
L
Sbjct: 533 L 533
>AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical
protein C35A11.3 protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 FCT-ELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGL 283
FCT E T + T+V T+TS+ + SSNSP T T+ AS +T G L
Sbjct: 32 FCTRETSTTTATESTTVSTSTTATSSTPTTEIFSSNSPST----ETTTCASPTTSTNGHL 87
Query: 284 NFNT 295
T
Sbjct: 88 TSTT 91
>AL132876-16|CAD21672.2| 406|Caenorhabditis elegans Hypothetical
protein Y105E8A.20 protein.
Length = 406
Score = 27.9 bits (59), Expect = 9.0
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 2/175 (1%)
Frame = -2
Query: 702 DIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNP-VSCAIA-NAVLDVIEE 529
D V M K +GN V+ E F+ G+ YF GNP C+ N+ L I
Sbjct: 190 DNVKMSKSLGN------VVNPSEAITKFTAEGLRYFLLKHGNPSYDCSFNWNSCLQTINS 243
Query: 528 ENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAEAKHVV 349
+ + VGN LL+R V + G++ +E + D E A+ +
Sbjct: 244 ----DLVNNVGN-LLNR--------STVEKINKEGMYPKME-IEDIEAEIRENAKKLMEM 289
Query: 348 NRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNI 184
EN + D + + K ++ T ++A+RL ++ + E+D+ R+ ++
Sbjct: 290 VEESRENCVDLYD--EMSYFKIIENLMLTMKEANRLFQS-SQPWKEIDEKRLKSL 341
>AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRNA
synthetase (mitochondrial)protein.
Length = 500
Score = 27.9 bits (59), Expect = 9.0
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 2/175 (1%)
Frame = -2
Query: 702 DIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNP-VSCAIA-NAVLDVIEE 529
D V M K +GN V+ E F+ G+ YF GNP C+ N+ L I
Sbjct: 284 DNVKMSKSLGN------VVNPSEAITKFTAEGLRYFLLKHGNPSYDCSFNWNSCLQTINS 337
Query: 528 ENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAEAKHVV 349
+ + VGN LL+R V + G++ +E + D E A+ +
Sbjct: 338 ----DLVNNVGN-LLNR--------STVEKINKEGMYPKME-IEDIEAEIRENAKKLMEM 383
Query: 348 NRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNI 184
EN + D + + K ++ T ++A+RL ++ + E+D+ R+ ++
Sbjct: 384 VEESRENCVDLYD--EMSYFKIIENLMLTMKEANRLFQS-SQPWKEIDEKRLKSL 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,561
Number of Sequences: 27780
Number of extensions: 437920
Number of successful extensions: 1171
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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