Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16k20
(329 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 0.18
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 25 0.24
EF051030-1|ABN05618.1| 118|Apis mellifera phosphoenolpyruvate c... 23 0.96
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 23 0.96
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 2.2
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 2.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 3.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 3.9
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 5.1
DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein ... 20 6.7
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 20 6.7
AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein ... 20 6.7
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 20 8.9
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 20 8.9
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 20 8.9
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.4 bits (53), Expect = 0.18
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -2
Query: 271 LVNAISPAYPLGNLHWEG--IEREATSDNVVIGVPTLEDLGVTLTHMEDQVP 122
L+ P + L W I REATSD V +G+ T+ L +P
Sbjct: 248 LIQVYVPCVLIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLP 299
Score = 25.0 bits (52), Expect = 0.24
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 126 TWSSMCVKVTPKSSRVGTPITTLSEVASLSIPSQ*RFP 239
+W S + S RVG ITT+ ++++S+ S+ P
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLP 299
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 25.0 bits (52), Expect = 0.24
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 271 LVNAISPAYPLGNLHWEG--IEREATSDNVVIGVPTL 167
L+ P L L W + REAT+D V +G+ T+
Sbjct: 217 LIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTV 253
>EF051030-1|ABN05618.1| 118|Apis mellifera phosphoenolpyruvate
carboxykinase protein.
Length = 118
Score = 23.0 bits (47), Expect = 0.96
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 238 GNLHWEGIEREATSD 194
G + WEG+E+E D
Sbjct: 100 GGIFWEGLEKEVGDD 114
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 23.0 bits (47), Expect = 0.96
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 22 KQFKLSKLVEGLVSGTLQADP 84
K F L +V L+SG Q DP
Sbjct: 108 KMFILPLIVSSLISGMAQLDP 128
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 164 GFGRHLDAHGRPG 126
G+GRHL H + G
Sbjct: 209 GYGRHLPGHAQMG 221
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.4 bits (43), Expect = 2.9
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2
Query: 181 GVPTLEDLG 155
GVPTLE+LG
Sbjct: 209 GVPTLEELG 217
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 3.9
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -2
Query: 247 YPLGNLHWEGIEREATSD 194
YP+ + WE RE D
Sbjct: 545 YPIEEIKWERANRELPDD 562
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 3.9
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -2
Query: 247 YPLGNLHWEGIEREATSD 194
YP+ + WE RE D
Sbjct: 545 YPIEEIKWERANRELPDD 562
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 20.6 bits (41), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 286 PLKVALVNAISPAYPLGNLHWEGIE 212
PL V+ + + P Y G W G E
Sbjct: 265 PLDVSSNDKVHPLYGHGVCKWPGCE 289
>DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein 6
protein.
Length = 125
Score = 20.2 bits (40), Expect = 6.7
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 40 KLVEGLVSGTLQADPCSTDGRE-KVSVPTEPGLPCASR*RPNPQGWARRSPHYLK 201
+++ + L PC+ +GRE K +P C ++ + A + +YLK
Sbjct: 38 RILTNYIKCMLDEGPCTNEGRELKKILPDALSTGC-NKCNEKQKHTANKVVNYLK 91
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 20.2 bits (40), Expect = 6.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 126 TWSSMCVKVTPKSSRVGTPITTLSEVASLS 215
+W S + S+RV ITT+ + ++S
Sbjct: 259 SWVSFWINHEATSARVALGITTVLTMTTIS 288
>AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein
protein.
Length = 125
Score = 20.2 bits (40), Expect = 6.7
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 40 KLVEGLVSGTLQADPCSTDGRE-KVSVPTEPGLPCASR*RPNPQGWARRSPHYLK 201
+++ + L PC+ +GRE K +P C ++ + A + +YLK
Sbjct: 38 RILTNYIKCMLDEGPCTNEGRELKKILPDALSTGC-NKCNEKQKHTANKVVNYLK 91
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 19.8 bits (39), Expect = 8.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -2
Query: 91 YYMDRLGEFPKPDPPPVY 38
Y ++ + + P P P PVY
Sbjct: 110 YNINYIEQIPVPVPVPVY 127
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 19.8 bits (39), Expect = 8.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 217 IEREATSDNVVIGVPTLEDLGVTLTHMEDQVPWELKP 107
IE SDN I PT+ ++ + L ++D V + P
Sbjct: 98 IEDLTKSDNEDITYPTVLEVQLNLPILKDGVQIFIAP 134
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 19.8 bits (39), Expect = 8.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 217 IEREATSDNVVIGVPTLEDLGVTLTHMEDQVPWELKP 107
IE SDN I PT+ ++ + L ++D V + P
Sbjct: 136 IEDLTKSDNEDITYPTVLEVQLNLPILKDGVQIFIAP 172
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,191
Number of Sequences: 438
Number of extensions: 2670
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7342137
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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