Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16k13
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 279 YFKRYYYSSKCINVLHIPNCIDISLDYVNY 368
           Y K+ YY +  IN+  IP  + + + Y N+
Sbjct: 111 YNKKLYYKNYIINIEQIP--VPVPVYYGNF 138


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 279 YFKRYYYSSKCINVLHIPNCIDISLDYVNY 368
           Y K+ YY +  IN+  IP  + + + Y N+
Sbjct: 336 YNKKLYYKNYIINIEQIP--VPVPVYYGNF 363


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 550 YLYLSNYRLEYSKSNCILAPFSY 482
           Y+Y   Y L YS S C     SY
Sbjct: 55  YIYNPRYPLPYSGSKCTWTITSY 77


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 458 VLQCIGILVRI*SALDHECLNNLVHRYL 375
           VLQ +G+L  I S + +    N VHR L
Sbjct: 734 VLQLVGMLRGIASGMQYLAEMNYVHRDL 761


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 199 FAVFDIKRLLTLKESHFKK*ARNSDKSILKDTTIAVNV*MY 321
           FA  DIK+   +   +  + ++NS+ SI++  ++  N+ +Y
Sbjct: 606 FATKDIKQNEEITFDYMCQSSKNSENSIMQRASMKENLNVY 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,330
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)