Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16k12
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    35   0.014
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    29   1.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.6  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    28   2.1  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   3.6  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   4.8  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.8  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   6.3  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.3  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   6.3  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   8.4  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   8.4  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   8.4  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   8.4  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -2

Query: 880 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQL 746
           D K +VV + +   A +CSKY PSIP      +TR  Q   QS L
Sbjct: 402 DAKAIVVLSTSGNTARLCSKYRPSIP---IVMVTRCPQRARQSHL 443


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 192 CAYLM*VVFYTNYYP*RLLSQSLQTSKASCFSSTNSLPVASSI*RAKSEIVRPS 353
           C Y    +F T++ P  L S    TSK S  +S  + P++  +   KSE+V P+
Sbjct: 5   CLYRRSSLFDTSFVP--LHSSIPATSKMSASNSDVNAPISPVVDEGKSELVSPT 56


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 282 FSSTNSLPVASSI*RAKSEIVRPSTIFHFPLVTVTGNEYTTS 407
           +S+TNSLP+  +I    +E++ P+T ++    T+  + YT++
Sbjct: 130 YSNTNSLPITDTI-NGTTELIIPTTSYNNQSHTLIYSTYTST 170


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 5   NEQNDMKYLTIES*CFKNIYNSNTKIKTLIKALTI 109
           N  ND   L  +  CF+++ N+N K+K +IK + I
Sbjct: 197 NNNNDWSSLMKD--CFRDVVNNNRKMKEIIKDVMI 229


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 407 TRSTIRSI*NNSHANPSVFSAKEPISHVV 493
           T S++ SI  NSH NP    A +P++  V
Sbjct: 663 THSSVNSI--NSHGNPRTVDANDPVADTV 689


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 743 SKLGLSPVLIETSHGSEIFFWNRWSILRTY 832
           +K  LSP+L+   + S I +W+    LR Y
Sbjct: 337 AKHKLSPILLTAMYASSIIYWDADKELRNY 366


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 587 RRICNNGSKTWCCRYCCQENV 525
           R++  NGS+ + C YC  ENV
Sbjct: 369 RQLSRNGSQRFKCPYCPNENV 389


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 676 QFPDASNAVAIVGGAQKSVSE 614
           QF D +N+   VGG  K VSE
Sbjct: 296 QFADTANSTVFVGGLSKFVSE 316


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
 Frame = -2

Query: 853 PANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQL---------AAKIGVPVKDVKRVI 701
           P N+N    S    SIP    T       N AQS L         A K+G      K  +
Sbjct: 240 PPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTARKLGFASSQTKSAV 299

Query: 700 IWGNHSSTQFPDAS 659
              NHS     DAS
Sbjct: 300 S-NNHSRNSSKDAS 312


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 804 GIDGAYLEHIRAFVLAGLPTTR 869
           G+ G+Y EH+    + G+P+T+
Sbjct: 87  GVAGSYAEHVPVVHIVGMPSTK 108


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 678 VDEWFPQMITLLT 716
           VDEWFP+M T LT
Sbjct: 231 VDEWFPKMETSLT 243


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 402 LYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLAKSW 292
           L +HS   +   S KLLR S   IL V C    A+ W
Sbjct: 174 LIVHSSKFMSDHSQKLLRNSKHGILVVGCGQSAAEIW 210


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -2

Query: 748 LAAKIGVPVKDVKRVIIWGNHSSTQFPDASNAVAIVGGA---QKSVSEIIND 602
           LA + G+P  +V+ V  + NH  +  P  S   + +G A   +K V+  I D
Sbjct: 639 LARRRGLPRLEVRGVAAFTNHLESSHPPISTVDSSIGSASVVEKGVANSIVD 690


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 804 GIDGAYLEHIRAFVLAGLPTTRTFTS 881
           GI GAY E++   +++G P T   +S
Sbjct: 89  GIGGAYAENLPVILVSGSPNTNDLSS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,684,410
Number of Sequences: 5004
Number of extensions: 78915
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)