Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16k09
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    40   4e-04
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    30   0.33 
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   2.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   4.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.4  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   7.1  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.4  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = -1

Query: 758 AKEGRKSTVML--FRLERIQKTTPFLTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEAL 585
           AK  +K+ V +    +  +Q  +  L  F++  N  D+     HLVS+P       S  L
Sbjct: 129 AKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSDSC----HLVSIPP------SPQL 177

Query: 584 ITSXXXXXXXXXXXXXXXXPFEFGVDPNVDPELALALRVSM 462
           ++                  FE+GVDPN+D ELALAL +SM
Sbjct: 178 LSDLVNQSPIGQGVVASQNQFEYGVDPNLDVELALALELSM 218


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 332 DAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLEN 177
           D +ELS+EE +AL  + S  +E   AEE++  +EE +    D    + + +N
Sbjct: 62  DELELSDEELVAL--ESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 698 TPFLTTFVNTLNGKDTST 645
           TPFL  F N +NGK+ ST
Sbjct: 513 TPFLVLFSNIVNGKEPST 530


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 216 NFCI-FFRNIHALFSLGCFLLHAHL 287
           NFCI FF+N  AL+S    +LHA L
Sbjct: 75  NFCIVFFKNWEALYSQYDGILHASL 99


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 79  KDPHLKRISLFTFSFSFE*IHVCK 8
           + PHL  +S+F    S+E +H+C+
Sbjct: 630 RKPHLVTVSIFGKDESYELLHICE 653


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -1

Query: 323 ELSEEEQIALAMQMSMQQ 270
           EL+E+EQI LAM++S+ +
Sbjct: 644 ELNEQEQIELAMRLSLME 661


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +3

Query: 606 TASSWHRHKVTSP--SRCVFPI 665
           TA+SWH HK   P  S  V P+
Sbjct: 224 TATSWHAHKFLDPAESGAVIPV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,299
Number of Sequences: 5004
Number of extensions: 52099
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)