Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16k09
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    36   0.028
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519...    32   0.60 
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    32   0.60 
06_02_0330 - 14492988-14493299                                         30   2.4  
01_06_0065 + 26107522-26107700,26110875-26111253                       29   5.6  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    28   9.7  
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           28   9.7  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 644 GGSHLVSVPAGG---CVVLSEALITSXXXXXXXXXXXXXXXXPFEFGVDPNVDPELALAL 474
           G SH+V +P G     V+ +  +IT                  +E+ VDPNVDPE A AL
Sbjct: 164 GSSHIVHIPPGEDLRAVLANTPIITGDEGGGAAAGGASR----YEYNVDPNVDPEFAEAL 219

Query: 473 RVS 465
           R+S
Sbjct: 220 RLS 222



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 524 FEFGVDPNVDPELALALRVS 465
           +E+ VDPN DPELA   R++
Sbjct: 237 YEYSVDPNADPELAETFRLA 256


>10_08_0799 -
           20650799-20650947,20651022-20651114,20651906-20651934,
           20652039-20652097,20652170-20652283,20652374-20652534,
           20652544-20652663,20652741-20653469,20654980-20655244
          Length = 572

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 281 SMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRN---AMSTI 123
           +M    PQ  + +D + + A V+NDP+ L+  LE     +   E +RN   AMS I
Sbjct: 193 NMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNI 248


>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
            1772689-1772747,1772816-1772929,1773030-1773238,
            1773347-1774087,1775678-1776238,1776295-1776419,
            1778187-1778317,1779020-1779178,1779471-1779728,
            1780140-1780164,1780531-1780592,1780944-1781003,
            1781112-1781219,1781703-1781838,1781880-1781929,
            1782024-1782096,1782209-1782345,1782441-1782527,
            1782624-1782721,1783259-1783369,1783685-1783769,
            1783880-1783969
          Length = 1259

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 263  PQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRN---AMSTI 123
            PQ  E +D + + A V+NDP+ L+  +E     +   E +RN   AMS I
Sbjct: 900  PQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNI 949


>06_02_0330 - 14492988-14493299
          Length = 103

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -3

Query: 588 FDNKSSDRW*WSRPFWLWFVSFRIWSRSQCRPRARISSTCVDGRTKATSRR 436
           FD+     W  +   W W  S  I +  + R  A ++  C  GR  A  RR
Sbjct: 20  FDSHDGGEWKVTSQRWRWLNSGNIAATQRWRGGAPVAPDCTKGRAGAARRR 70


>01_06_0065 + 26107522-26107700,26110875-26111253
          Length = 185

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 633 PCVCASWRLCC 601
           PC C +WRLCC
Sbjct: 20  PCPCPAWRLCC 30


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 296 LAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENL 174
           LA ++   ++A  A  + DVS+    ++  P+FL+  +E +
Sbjct: 324 LAARLEKAKDAMMASSTSDVSDTKVVILEPPSFLKRTMEKI 364


>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 711 DSENNPLFDYLCQHTKWERHIDWGKSPCVCASW 613
           D++   L D+L         I+W  SP VC +W
Sbjct: 27  DADRAALLDFLAGLGGGRGRINWASSPRVCGNW 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,543
Number of Sequences: 37544
Number of extensions: 346187
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)