Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16k09
(788 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S79502-1|AAB35145.1| 396|Drosophila melanogaster 26S protease r... 87 3e-17
AY089333-1|AAL90071.2| 433|Drosophila melanogaster AT14053p pro... 87 3e-17
AE014296-3569|AAF51741.1| 396|Drosophila melanogaster CG7619-PA... 87 3e-17
BT010293-1|AAQ23611.1| 1103|Drosophila melanogaster LD19434p pro... 31 2.4
AE014296-3549|AAF51732.2| 1103|Drosophila melanogaster CG33214-P... 31 2.4
AY118759-1|AAM50619.1| 656|Drosophila melanogaster GH09073p pro... 29 5.5
AE014134-1040|AAF52336.2| 656|Drosophila melanogaster CG9144-PA... 29 5.5
>S79502-1|AAB35145.1| 396|Drosophila melanogaster 26S protease
regulatory complexnon-ATPase subunit protein.
Length = 396
Score = 86.6 bits (205), Expect = 3e-17
Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 13/83 (15%)
Frame = -1
Query: 332 DAMELSEEEQIALAMQMSMQ--------QEA--PQAEES---MDVSEEYAEVMNDPAFLQ 192
D ++EEEQIA AMQMSMQ Q+A P+ +E+ MDV E+Y+EV+ DPAFLQ
Sbjct: 298 DFANMTEEEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAPMDVDEDYSEVIGDPAFLQ 357
Query: 191 SVLENLPGVDPQSEAIRNAMSTI 123
SVLENLPGVDPQSEA+R+A+ ++
Sbjct: 358 SVLENLPGVDPQSEAVRDAVGSL 380
Score = 72.9 bits (171), Expect = 4e-13
Identities = 44/77 (57%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = -1
Query: 689 LTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXP-FEFG 513
LT F+N LNGKD + GSHLVSVP G VLS+AL++S FEFG
Sbjct: 153 LTAFINALNGKDGT--GSHLVSVPRGS--VLSDALLSSPIIQGEDGMGGAGLGGNVFEFG 208
Query: 512 VDPNVDPELALALRVSM 462
VDPN DPELALALRVSM
Sbjct: 209 VDPNEDPELALALRVSM 225
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 753 RREKVNCDVVSFGEDSENNPL 691
++EKVN D+VSFG+ NN +
Sbjct: 132 KKEKVNVDIVSFGDHGNNNEI 152
>AY089333-1|AAL90071.2| 433|Drosophila melanogaster AT14053p
protein.
Length = 433
Score = 86.6 bits (205), Expect = 3e-17
Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 13/83 (15%)
Frame = -1
Query: 332 DAMELSEEEQIALAMQMSMQ--------QEA--PQAEES---MDVSEEYAEVMNDPAFLQ 192
D ++EEEQIA AMQMSMQ Q+A P+ +E+ MDV E+Y+EV+ DPAFLQ
Sbjct: 335 DFANMTEEEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAPMDVDEDYSEVIGDPAFLQ 394
Query: 191 SVLENLPGVDPQSEAIRNAMSTI 123
SVLENLPGVDPQSEA+R+A+ ++
Sbjct: 395 SVLENLPGVDPQSEAVRDAVGSL 417
Score = 72.9 bits (171), Expect = 4e-13
Identities = 44/77 (57%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = -1
Query: 689 LTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXP-FEFG 513
LT F+N LNGKD + GSHLVSVP G VLS+AL++S FEFG
Sbjct: 190 LTAFINALNGKDGT--GSHLVSVPRGS--VLSDALLSSPIIQGEDGMGGAGLGGNVFEFG 245
Query: 512 VDPNVDPELALALRVSM 462
VDPN DPELALALRVSM
Sbjct: 246 VDPNEDPELALALRVSM 262
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 753 RREKVNCDVVSFGEDSENNPL 691
++EKVN D+VSFG+ NN +
Sbjct: 169 KKEKVNVDIVSFGDHGNNNEI 189
>AE014296-3569|AAF51741.1| 396|Drosophila melanogaster CG7619-PA
protein.
Length = 396
Score = 86.6 bits (205), Expect = 3e-17
Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 13/83 (15%)
Frame = -1
Query: 332 DAMELSEEEQIALAMQMSMQ--------QEA--PQAEES---MDVSEEYAEVMNDPAFLQ 192
D ++EEEQIA AMQMSMQ Q+A P+ +E+ MDV E+Y+EV+ DPAFLQ
Sbjct: 298 DFANMTEEEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAPMDVDEDYSEVIGDPAFLQ 357
Query: 191 SVLENLPGVDPQSEAIRNAMSTI 123
SVLENLPGVDPQSEA+R+A+ ++
Sbjct: 358 SVLENLPGVDPQSEAVRDAVGSL 380
Score = 72.9 bits (171), Expect = 4e-13
Identities = 44/77 (57%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = -1
Query: 689 LTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXP-FEFG 513
LT F+N LNGKD + GSHLVSVP G VLS+AL++S FEFG
Sbjct: 153 LTAFINALNGKDGT--GSHLVSVPRGS--VLSDALLSSPIIQGEDGMGGAGLGGNVFEFG 208
Query: 512 VDPNVDPELALALRVSM 462
VDPN DPELALALRVSM
Sbjct: 209 VDPNEDPELALALRVSM 225
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 753 RREKVNCDVVSFGEDSENNPL 691
++EKVN D+VSFG+ NN +
Sbjct: 132 KKEKVNVDIVSFGDHGNNNEI 152
>BT010293-1|AAQ23611.1| 1103|Drosophila melanogaster LD19434p
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -2
Query: 346 CLSVVMQWNSLKRSRLRLQCK*ACNKKHPRLKRAWMFLKNMQKL*MIQHFYRVC 185
CL+ V W+ L++ RL+L AC H L+RA+ L Q + FY C
Sbjct: 119 CLNAVHLWSCLEQQRLKLLQNNAC---HQHLRRAYESLG--QDYSAVDEFYTAC 167
>AE014296-3549|AAF51732.2| 1103|Drosophila melanogaster CG33214-PA
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -2
Query: 346 CLSVVMQWNSLKRSRLRLQCK*ACNKKHPRLKRAWMFLKNMQKL*MIQHFYRVC 185
CL+ V W+ L++ RL+L AC H L+RA+ L Q + FY C
Sbjct: 119 CLNAVHLWSCLEQQRLKLLQNNAC---HQHLRRAYESLG--QDYSAVDEFYTAC 167
>AY118759-1|AAM50619.1| 656|Drosophila melanogaster GH09073p
protein.
Length = 656
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 362 ERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMND-PAFL 195
ER LG + +E + A+A + + +SMDV EEY E+ N P +L
Sbjct: 361 ERRSRARLGDATIHYLDEYRTAVATTNESNDDDDEEYDSMDVQEEYDEMENSIPKYL 417
>AE014134-1040|AAF52336.2| 656|Drosophila melanogaster CG9144-PA
protein.
Length = 656
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 362 ERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMND-PAFL 195
ER LG + +E + A+A + + +SMDV EEY E+ N P +L
Sbjct: 361 ERRSRARLGDATIHYLDEYRTAVATTNESNDDDDEEYDSMDVQEEYDEMENSIPKYL 417
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,356,533
Number of Sequences: 53049
Number of extensions: 597183
Number of successful extensions: 1867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1858
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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