Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16k09
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome r...    62   6e-10
U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   2.9  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   6.6  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      28   6.6  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    28   6.6  
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    28   8.8  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    28   8.8  

>AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 10 protein.
          Length = 346

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
 Frame = -1

Query: 686 TTFVNTLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXPF---EF 516
           +TFV+TLNGK+ S  GS L+ VP G    L++AL+ S                      F
Sbjct: 156 STFVDTLNGKEGS--GSSLIVVPQGSS--LTDALLQSSVCKNEDGQAAFGGGGNGMDNAF 211

Query: 515 GVDPNVDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDTAVERAIAMSLG 336
           G+D   DP+LALALRVSM                            +  AV     M +G
Sbjct: 212 GMDVENDPDLALALRVSMEEERARQAAAAAANGGAADSGADAEVAAAAAAVPLE-EMDMG 270

Query: 335 RDAMELSEEEQIALAMQMSMQQEAPQAE-----ESMDV-------SEEYAEVMNDPAFLQ 192
                ++EE+Q+  A+++SMQ+ AP  +     E MDV        +   ++MN+P  LQ
Sbjct: 271 ----AMTEEQQLEWALRLSMQENAPAEQPQVQHEQMDVDGAPAVGGDNLDDLMNNPELLQ 326

Query: 191 SVLENLPGVDPQSE 150
            ++++LP  + + +
Sbjct: 327 QIVDDLPAANAEKD 340


>U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical
           protein K02G10.1 protein.
          Length = 281

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 750 REKVNCDVVSFGEDSENNPLFDYLCQHTKWERHIDW 643
           R+    D+  + ED+E  P  +Y C     ERH+ W
Sbjct: 87  RKSCVADLRVYAEDNEAQPEVEYACAQPTVERHLSW 122


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 323  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 147
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 3366 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 3422

Query: 146  IR 141
            +R
Sbjct: 3423 LR 3424



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 323  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 147
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 4269 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 4325

Query: 146  IR 141
            +R
Sbjct: 4326 LR 4327



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 323  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 147
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 5223 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 5279

Query: 146  IR 141
            +R
Sbjct: 5280 LR 5281



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 323  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 147
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 6126 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 6182

Query: 146  IR 141
            +R
Sbjct: 6183 LR 6184



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 323  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 147
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 7029 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 7085

Query: 146  IR 141
            +R
Sbjct: 7086 LR 7087



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 323  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 147
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 7932 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 7988

Query: 146  IR 141
            +R
Sbjct: 7989 LR 7990


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -1

Query: 371  TAVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQ 192
            TA   +I     RDA    +EE+I   +QM+   E  +  E +   E+  +   D  F Q
Sbjct: 1736 TASAVSIGKIFERDAHSDEDEEEIIDPIQMAAALEIRELNEELGRIEQLEKKKTDDLFKQ 1795

Query: 191  SVLENLPGVDPQSEA 147
            S   +    + +S A
Sbjct: 1796 SYSSSSSETESESSA 1810


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -1

Query: 275 QQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGV----DPQSEAIRNAMSTI 123
           ++E    EE +++S+E  E ++D A  ++V+E         DP+ +A +N+M  I
Sbjct: 597 EEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASEAVEKDPKLKASKNSMDRI 651


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -1

Query: 275 QQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGV----DPQSEAIRNAMSTI 123
           ++E    EE +++S+E  E ++D A  ++V+E         DP+ +A +N+M  I
Sbjct: 597 EEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASEAVEKDPKLKASKNSMDRI 651


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 498 YIGIYSKFERRQTRARRACSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 650
           +IG++   E  +   R +CS++        ++R   ++ + HR    SP R
Sbjct: 8   HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 498 YIGIYSKFERRQTRARRACSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 650
           +IG++   E  +   R +CS++        ++R   ++ + HR    SP R
Sbjct: 8   HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,609
Number of Sequences: 27780
Number of extensions: 301049
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)