Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16k04
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 75 3e-15
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 52 2e-08
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha... 35 0.005
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 1.4
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 26 2.4
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 26 2.4
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 2.4
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 3.1
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 3.1
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 3.1
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 4.1
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 4.1
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 5.5
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 5.5
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 24 7.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 9.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 9.6
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 75.4 bits (177), Expect = 3e-15
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = -1
Query: 291 ELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLI 112
EL F+ E+QK + Q IH+F S CW KCI G KLD E C+ NCVERF+D + I
Sbjct: 19 ELSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNCVERFLDCNFHI 78
Query: 111 TNRFAQMLEKGG 76
R+A LEK G
Sbjct: 79 IKRYA--LEKFG 88
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 52.4 bits (120), Expect = 2e-08
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = -1
Query: 315 PSPKGADSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTETCITNCVER 136
PS + S + QE AQ I + N C+DKCI +PG+ D ++C++ C+ER
Sbjct: 12 PSSEDKKSIFMKQIRQELAVAQAGELISKINENCFDKCIPEPGSTFDPNEKSCVSKCMER 71
Query: 135 FIDTSLLITNRFAQMLEK 82
++D +++ + +++
Sbjct: 72 YMDAWNIVSRTYISRMQR 89
>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
Tim9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 84
Score = 34.7 bits (76), Expect = 0.005
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 276 LIQEKQKAQFQAQIHEFNSFCWDKCIEK-PGAKLDSRTETCITNCVERFIDTSLLITNRF 100
+++ KQ ++ C+ C++ +KL ++ CI C ++F+ S + RF
Sbjct: 15 VLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRF 74
Query: 99 AQMLEK 82
A+ K
Sbjct: 75 AEFNAK 80
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 212 GTSVLKNLELSWTLGPKHVSQTVWKDSLIP 123
GT V +NL L G +V QTV ++S IP
Sbjct: 614 GTFVYRNLSLIIDKGLANVLQTVLRESFIP 643
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 294 SELQDF-LIQEKQKAQFQAQIHEFNSFCWDKCIEKPG 187
SE+ D L +EK +AQF A+ + N F C PG
Sbjct: 3 SEISDLSLAKEKSEAQFIARNPKSNDFHCKACDSLPG 39
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +2
Query: 80 PFSSICANLFVINSEVSMNLSTQFVIHVSVRESSLAPGFSIHLSQQKLLNSCICA 244
P SS+ N I S +L + H+S L + KLL + +CA
Sbjct: 167 PISSLVCNAMQIFWSTSPSLQNEGQFHISTYNQLLGESNNYRWGSLKLLKTPLCA 221
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 319 INVAHFCLLLSIVFLYLK 372
+ A+ C+L+SIV LYLK
Sbjct: 208 VGTAYACMLISIVSLYLK 225
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 280 ILKFGICTFWTRKINVAHFCLLLSIVFLY 366
IL++G+C + +R I V C L+ FL+
Sbjct: 993 ILRYGVCGYLSRSIPVISACELVVNNFLH 1021
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 119 SEVSMNLSTQFVIHVSVRE 175
S++S+ LST VIH SV+E
Sbjct: 916 SDISVKLSTLNVIHTSVKE 934
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 2 IYSSHCITL*TETESFRY 55
IYSSHCITL ES RY
Sbjct: 396 IYSSHCITL---IESVRY 410
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 318 NQCRSFLSFAEYCIFIS 368
+QC S LSFA+Y I+++
Sbjct: 499 SQCFSMLSFAKYAIYLT 515
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 312 SPKGADSELQDFLIQEKQKAQFQAQIHEFN 223
SPKG ++D++ K F AQ EFN
Sbjct: 100 SPKGYSDLIRDYVDYLLDKLSFHAQHPEFN 129
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 113 INSEVSMNLSTQFVIHVSVRESS 181
+NSE+S+ LS FV++ + +E +
Sbjct: 456 LNSELSLQLSDDFVLYKNTQEEN 478
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 198 EKPGAKLDSRTETCITN 148
EKPG LDS+ +T I N
Sbjct: 306 EKPGVALDSQNDTSIFN 322
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 276 LIQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTETCIT 151
++ E+QK Q+ E WDK I G+K ++ ++T I+
Sbjct: 77 MMYEEQKEL--TQLGEMLDRLWDKHINSEGSKSETISDTAIS 116
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.8 bits (49), Expect = 9.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 252 QFQAQIHEFNSFCWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLI 112
Q+ + + EF+ +D+ IE PG L + +C+ERF+ LI
Sbjct: 3294 QYSSFLCEFHHQKFDE-IEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 306 KGADSELQDFLIQEKQKAQFQAQIHEFNS 220
+G D L FL + K + A++ EFN+
Sbjct: 2071 RGTDGNLYPFLCKPKDDLRKDARLMEFNN 2099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,812
Number of Sequences: 5004
Number of extensions: 30618
Number of successful extensions: 100
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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