Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16j08
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.65 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.65 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.65 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.65 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 258 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 359
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 183 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 216


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 258 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 359
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 183 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 216


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 258 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 359
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 234 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 267


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 258 IKNIKGTFNAYAFFNPFCILAQAF*SYSQTIICF 359
           I + +G  N + F +P C  A    SY QT I +
Sbjct: 183 ILSCQGRLNIFPFDDPLCSFAIESISYEQTAITY 216


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 110 SYKSMFTIHTDTYSFINIKNNNFYYT 187
           +YK  F   TD   +I I+    +YT
Sbjct: 212 TYKGDFPTETDITFYIIIRRKTLFYT 237


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 185 CNKNCYFLCL*KNRCLYEW*TWIY 114
           C+ +  F    + RC+ +W +W Y
Sbjct: 131 CDIDVEFFPFDEQRCVLKWASWTY 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,599
Number of Sequences: 438
Number of extensions: 4864
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)