Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16j04
(830 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 42 7e-06
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 42 7e-06
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 38 2e-04
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 35 8e-04
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 8.0
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 41.9 bits (94), Expect = 7e-06
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = -2
Query: 652 DDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 482
+D G Y+C +N+ G H V G + ++ V G+ +++ C + G P E+
Sbjct: 492 EDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIK 551
Query: 481 WKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCS 326
W+ EL + L +V D T+++ ++ DAG+Y CS
Sbjct: 552 WERANRELPDD------LRQKVLP-------DGTLVITSVQKKGDAGVYTCS 590
Score = 27.1 bits (57), Expect = 0.21
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Frame = -2
Query: 652 DDYGNYTCGLKNQTGHIKA---WMVTGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSE- 488
+D G Y C N G A +VT +H ++T V G N + C++ P +
Sbjct: 303 EDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGP 362
Query: 487 --VTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
+TW YK GT G + +L L R D G+YQC
Sbjct: 363 HFITW-YKDGRQLPGT-----------------GRQSELLRLNGINREDRGMYQC 399
Score = 26.6 bits (56), Expect = 0.28
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Frame = -2
Query: 658 NEDDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTK---DANVVEGQNIKITCKLIGKP 497
N +D G Y C ++ G A + GN + + + G + + C G P
Sbjct: 390 NREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNP 449
Query: 496 YSEVTW 479
+VTW
Sbjct: 450 TPQVTW 455
Score = 25.4 bits (53), Expect = 0.65
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Frame = -2
Query: 682 TFQIKGRSNEDDYGNYTCGLKNQTGHI-----KAWMVTGNVHAKMTKDANVVEGQNIKIT 518
T I + D G YTC +N+ GH ++ + T + EG +
Sbjct: 572 TLVITSVQKKGDAGVYTCSARNKQGHSARRSGDVAVIVPPIIEPFTFQEGLSEGMRTRTV 631
Query: 517 CKL-IGKPYSEVTW 479
C + G P ++W
Sbjct: 632 CGVAAGDPPLTISW 645
Score = 24.2 bits (50), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 382 TVLVLQNAERADAGLYQCS---PAGGTPADVTLRV 287
+VL L+ D G+Y+CS P G A++ L V
Sbjct: 293 SVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIV 327
Score = 23.4 bits (48), Expect = 2.6
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = -2
Query: 442 VSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVT 296
+ + +G VQL+ N L ++ D C G TP VT
Sbjct: 792 IGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVT 840
Score = 23.0 bits (47), Expect = 3.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 448 TDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQ 332
TDVS V L QG+ +V + A + +G Y+
Sbjct: 717 TDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYE 755
Score = 23.0 bits (47), Expect = 3.5
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = -2
Query: 622 KNQTGHIKAWMVTGNVHAKMTK-DANVVEGQ--NIKITCKLIGKPYSEVTWKYKKDELDN 452
+ Q+ + A + T V A++T +VV + + C +G P E W YK
Sbjct: 1297 EGQSSKVAAQVPTNRVPARITSFGGHVVRPWRGSATLACNAVGDPTRE--W-YK----GQ 1349
Query: 451 GTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
G + R +N Q L + L+L N + D G Y C
Sbjct: 1350 GEQI------RTDSTRNIQILPSGELMLSNLQSQDGGDYTC 1384
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 649 DYGNYTCGLKNQTGHIK 599
D G+YTC ++N G+ K
Sbjct: 1378 DGGDYTCQVENAQGNDK 1394
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 41.9 bits (94), Expect = 7e-06
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = -2
Query: 652 DDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 482
+D G Y+C +N+ G H V G + ++ V G+ +++ C + G P E+
Sbjct: 492 EDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIK 551
Query: 481 WKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCS 326
W+ EL + L +V D T+++ ++ DAG+Y CS
Sbjct: 552 WERANRELPDD------LRQKVLP-------DGTLVITSVQKKGDAGVYTCS 590
Score = 27.1 bits (57), Expect = 0.21
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Frame = -2
Query: 652 DDYGNYTCGLKNQTGHIKA---WMVTGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSE- 488
+D G Y C N G A +VT +H ++T V G N + C++ P +
Sbjct: 303 EDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGP 362
Query: 487 --VTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
+TW YK GT G + +L L R D G+YQC
Sbjct: 363 HFITW-YKDGRQLPGT-----------------GRQSELLRLNGINREDRGMYQC 399
Score = 26.6 bits (56), Expect = 0.28
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Frame = -2
Query: 658 NEDDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTK---DANVVEGQNIKITCKLIGKP 497
N +D G Y C ++ G A + GN + + + G + + C G P
Sbjct: 390 NREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNP 449
Query: 496 YSEVTW 479
+VTW
Sbjct: 450 TPQVTW 455
Score = 26.2 bits (55), Expect = 0.37
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Frame = -2
Query: 682 TFQIKGRSNEDDYGNYTCGLKNQTGHI--KAWMVTGNVHAKM---TKDANVVEGQNIKIT 518
T I + D G YTC +N+ GH ++ V V K+ T D ++ G+ +T
Sbjct: 572 TLVITSVQKKGDAGVYTCSARNKQGHSARRSGDVAVIVPPKISPFTADRDLHLGERTTLT 631
Query: 517 CKLI-GKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAG 341
C + G ++W L +G + RV + +Q N++L++++ G
Sbjct: 632 CSVTRGDLPLSISW------LKDGRAMGP--SERVHVTNMDQ--YNSILMIEHLSPDHNG 681
Query: 340 LYQC 329
Y C
Sbjct: 682 NYSC 685
Score = 24.2 bits (50), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 382 TVLVLQNAERADAGLYQCS---PAGGTPADVTLRV 287
+VL L+ D G+Y+CS P G A++ L V
Sbjct: 293 SVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIV 327
Score = 23.4 bits (48), Expect = 2.6
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = -2
Query: 442 VSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVT 296
+ + +G VQL+ N L ++ D C G TP VT
Sbjct: 788 IGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVT 836
Score = 23.0 bits (47), Expect = 3.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 448 TDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQ 332
TDVS V L QG+ +V + A + +G Y+
Sbjct: 713 TDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYE 751
Score = 23.0 bits (47), Expect = 3.5
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = -2
Query: 622 KNQTGHIKAWMVTGNVHAKMTK-DANVVEGQ--NIKITCKLIGKPYSEVTWKYKKDELDN 452
+ Q+ + A + T V A++T +VV + + C +G P E W YK
Sbjct: 1293 EGQSSKVAAQVPTNRVPARITSFGGHVVRPWRGSATLACNAVGDPTRE--W-YK----GQ 1345
Query: 451 GTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
G + R +N Q L + L+L N + D G Y C
Sbjct: 1346 GEQI------RTDSTRNIQILPSGELMLSNLQSQDGGDYTC 1380
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 649 DYGNYTCGLKNQTGHIK 599
D G+YTC ++N G+ K
Sbjct: 1374 DGGDYTCQVENAQGNDK 1390
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 37.5 bits (83), Expect = 2e-04
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Frame = -2
Query: 643 GNYTCGLKNQTGHIK-AWMVTGNVHAKMT---KDANVVEGQNIKITCKLIGKPYSEVTWK 476
G Y C +N G + +T NV + D +G + ++ CK G P +VTW
Sbjct: 654 GEYVCTAENAAGTASHSTTLTVNVPPRWILEPTDKAFAQGSDARVECKADGFPKPQVTW- 712
Query: 475 YKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVT 296
KK D D + ++L + +++ L + N ++ + G Y C G A ++
Sbjct: 713 -KKAAGDTPGDY-----TDLKLSNPDISVEDGTLSINNIQKTNEGYYLCEAVNGIGAGLS 766
Score = 33.9 bits (74), Expect = 0.002
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 8/169 (4%)
Frame = -2
Query: 766 EIVWKKNSVPLGEVAGLKE-RYELQNKGLTFQIK-GRSNEDDYGNYTCGLKNQTG---HI 602
EI W+ + L L+ +Y N + + ++ +D G Y C ++ G H
Sbjct: 424 EITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLYKCIAASKVGSAEHS 483
Query: 601 KAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGS 422
V G + +V G+ +++TC + G P + W + T V
Sbjct: 484 ARLNVYGLPFIRHMDKKAIVAGETLRVTCPVAGYPIESIVW-------ERDTRV------ 530
Query: 421 RVQLEKNEQGLDNTVLVLQNAER-ADAGLYQC--SPAGGTPADVTLRVK 284
+ + + ++ N L+++N ER +D Y C A G A TL V+
Sbjct: 531 -LPINRKQKVFPNGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQ 578
Score = 33.9 bits (74), Expect = 0.002
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = -2
Query: 535 QNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAE 356
+++K+ C +G P EVTWK + AVL S +L + +G L ++ +
Sbjct: 1292 EDVKLPCLAVGVPAPEVTWKVR----------GAVLQSSDRLRQLPEG----SLFIKEVD 1337
Query: 355 RADAGLYQC 329
R DAG Y C
Sbjct: 1338 RTDAGEYSC 1346
Score = 31.1 bits (67), Expect = 0.013
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Frame = -2
Query: 652 DDYGNYTCGLKNQTG--HIKAWM-VTGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSEV 485
+D G Y C + N G ++ + VT + A++ ++ G+ TC + G P V
Sbjct: 280 EDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTV 339
Query: 484 TWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
+W L +G + GL+ VL +++ ++ D G+YQC
Sbjct: 340 SW------LKDGKPL---------------GLEEAVLRIESVKKEDKGMYQC 370
Score = 30.7 bits (66), Expect = 0.017
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 10/164 (6%)
Frame = -2
Query: 739 PLGEVAGLKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKAWM---VTGNVHA 569
P+ V+ LK+ L + +I+ ED G Y C ++N +A + G
Sbjct: 335 PIKTVSWLKDGKPLGLEEAVLRIESVKKEDK-GMYQCFVRNDQESAQATAELKLGGRFEP 393
Query: 568 KMTKDANVVE----GQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKN 401
+ A E G ++ + C G P E+TW+ L N + +G V +
Sbjct: 394 PQIRQAFAEETLQPGPSMFLKCVASGNPTPEITWELDGKRLSNTERLQ--VGQYVTV--- 448
Query: 400 EQGLDNTVLVLQNAERADAGLYQC---SPAGGTPADVTLRVKGV 278
G + L + + D GLY+C S G L V G+
Sbjct: 449 -NGDVVSHLNISSTHTNDGGLYKCIAASKVGSAEHSARLNVYGL 491
Score = 25.8 bits (54), Expect = 0.49
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -2
Query: 790 LAVPLDSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQT 611
LAV + + E+ WK G V +R +G F IK + D G Y+C ++N
Sbjct: 1299 LAVGVPAPEVTWKVR----GAVLQSSDRLRQLPEGSLF-IK-EVDRTDAGEYSCYVENTF 1352
Query: 610 GH 605
GH
Sbjct: 1353 GH 1354
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 35.1 bits (77), Expect = 8e-04
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 5/161 (3%)
Frame = -2
Query: 763 IVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKAWMVT 584
+VW++N L + + + N G + K + GNYTC ++ ++T
Sbjct: 342 LVWRRNGADLETLN--EPEIRVFNDGSLYLTKVQLIHA--GNYTCHAVRNQDVVQTHVLT 397
Query: 583 GNV--HAKMTKDANVVE-GQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQ 413
+ K+T + I C + G+P V W K DE N Q
Sbjct: 398 IHTIPEVKVTPRFQAKRLKEEANIRCHVAGEPLPRVQW-LKNDEALNHD----------Q 446
Query: 412 LEKNEQGLDNTVLVLQNAERADAGLYQC--SPAGGTPADVT 296
+K + + T L+++N + AD G Y C S GG D++
Sbjct: 447 PDKYDLIGNGTKLIIKNVDYADTGAYMCQASSIGGITRDIS 487
Score = 24.2 bits (50), Expect = 1.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 538 GQNIKITCKLIGKPYSEVTWKYKKDELD 455
G N++I C + G P + W+ +L+
Sbjct: 325 GDNVEIKCDVTGTPPPPLVWRRNGADLE 352
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.8 bits (44), Expect = 8.0
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = -3
Query: 378 CWCCRTRSAPTPACTSAARPGA 313
CWCC P + GA
Sbjct: 13 CWCCDNLGGPGSSSAGGVVTGA 34
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,500
Number of Sequences: 438
Number of extensions: 3410
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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