Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16j01
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    28   1.5  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    26   6.1  
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   8.1  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   8.1  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   8.1  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    26   8.1  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   8.1  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 584 EIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKT 426
           E++ V     +F GLHF     V R L    G   +   Y+T   + K VG+T
Sbjct: 250 EVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANGKYRT---YPKIVGET 299


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -2

Query: 872 SNDALAK---AKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADL 702
           S DA+ K   A K+   NL +V+     D P+    F ND +  +  +T  A  +K AD 
Sbjct: 254 STDAVPKKLDASKASSLNLEKVS--YLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADT 311

Query: 701 VVEAIVENIE 672
           +   +   +E
Sbjct: 312 LRTILKAKLE 321


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 373 GTNSLFTTKPGVSLQVIQVLPTDFPHSIIVLYVASDVSLPL 495
           GT+ +FT K  V      +LP + P  I +  +  +VSLPL
Sbjct: 75  GTSQIFTFKKNVL-----ILPANVPEGIELRILEENVSLPL 110


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
 Frame = -2

Query: 863  ALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIV 684
            A A+ K  I   + +  K   K  P+E E F+   L   N   +  E  +  D  +  I+
Sbjct: 872  ARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDELNEIL 931

Query: 683  ENIEVKHKLFKQLDGVAPSHTIFASNTSS---LSINEIASVVKRKD 555
               + + +LFKQ+       + +  N      + ++E+    +R++
Sbjct: 932  ARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSELPEFYQREE 977


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 74  CLFMLNNIISFRICRNLPQSSHLIFLQQQAFL 169
           CLF   +  SF  C+   ++SH +++ ++ +L
Sbjct: 210 CLFCAASFSSFDTCKKHMKASHSLYIPEREYL 241


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 761 SLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPS 627
           SLG +++A D      SAD + E + +  +  H L K L   A S
Sbjct: 430 SLGLVSSALDKITGLLSADNLSETVSQARDFSHTLSKSLKSRAKS 474


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 827 LSRVAKKMYKDNPQEGEKFV--NDSLGRINTATDAA--EASKSAD 705
           +S++A+     NP + E+FV   D+LG      D+   EAS  AD
Sbjct: 102 ISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKAD 146


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
 Frame = -2

Query: 872 SNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASK--SADLV 699
           SND L K+ + +  NLS V  K+ +      E+        ++  T+ A+  +      +
Sbjct: 518 SNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSI 577

Query: 698 VEAIVENIEVKHKLFKQLDGVAPSHTIFASN---TSSLSINEIASVVKRKDK 552
           +EA +  ++ ++K   ++     + +  A N   +S+ SI ++ S V  K++
Sbjct: 578 LEATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQ 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,147
Number of Sequences: 5004
Number of extensions: 73181
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)