Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16i08
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.           316   2e-88
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score =  316 bits (775), Expect = 2e-88
 Identities = 142/251 (56%), Positives = 174/251 (69%), Gaps = 1/251 (0%)
 Frame = -2

Query: 832 PYIYQEVIYRGNEPIQHTEYTPFGDVTEFRVGYELKPVFEGKNPLKWLKSWGENWNLSPS 653
           PYI+QEVI  GNE I   EY   G V EF+  YE+   F G N LKWL +WGE W   PS
Sbjct: 239 PYIFQEVIDYGNEAISKREYNGIGAVIEFKYSYEISNAFRGNNNLKWLVNWGEQWGFLPS 298

Query: 652 DRVVVFIDNHDTQRSN-EVLTYKNAKSYKAAIAFTLAHPYGEPRVMSGYFFDRTDQGPPS 476
              +VF+DNHDTQR N ++LTYK +K YK A+AF L+HP+G PR+MS + F   DQGPP+
Sbjct: 299 KDSLVFVDNHDTQRDNPQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFDFQSKDQGPPN 358

Query: 475 DGNEEILSPIINDDDTCGNGWVCEHRWRQIYQMVAFRNAVRDTRVENWWDNGLNQIAFSR 296
           DGN  ILSP I+D+  C NGW+CEHRWRQIY MV FRN V+ T+++NWWDNG NQIAFSR
Sbjct: 359 DGNGNILSPSIHDN-ICSNGWICEHRWRQIYNMVRFRNLVKGTKIDNWWDNGSNQIAFSR 417

Query: 295 GNKGFIAINAEGRDLDVILQTGLPSGTYCDVISGKIQGQECSGRKITVGSDGRAHIYVSK 116
           G  GF+A N +  DL   L+  LP G YCDVISG ++   C+G+ +TVGSDG A+I +  
Sbjct: 418 GCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANIEIGA 477

Query: 115 DGEDMHLATHV 83
             ED  LA HV
Sbjct: 478 GEEDGVLAIHV 488


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 128 NMRTTITANCYFSSGTFLALNFPAY 202
           N +  +  + Y+ SGT+  +N PAY
Sbjct: 185 NNKNFVDLSDYWKSGTWDIINVPAY 209


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 673 SRPRTSTISMDFYPQKLVLTRIRPE 747
           S P T +  M  +P++L+L R +PE
Sbjct: 590 SEPFTYSEKMLGFPERLILPRGKPE 614


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 673 SRPRTSTISMDFYPQKLVLTRIRPE 747
           S P T +  M  +P++L+L R +PE
Sbjct: 590 SEPFTYSEKMLGFPERLILPRGKPE 614


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 326 VPPIFNSSISDGISKCDHLIDLSPTMLANPAIAAGV 433
           +PPI N S   G+    ++    PTM   P++A  +
Sbjct: 417 MPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPI 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,279
Number of Sequences: 438
Number of extensions: 6179
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)