Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16i07
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 56 5e-09
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 55 1e-08
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 30 0.37
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 30 0.49
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.6
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.6
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 27 3.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.4
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 4.5
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 4.5
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 6.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.0
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 7.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 7.9
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 7.9
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 56.4 bits (130), Expect = 5e-09
Identities = 56/212 (26%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Frame = -2
Query: 760 RKTMKMYEEQENLTKYFIKKALDDIKM-NKSKSDDEKPVLEKLLDINEEYAYIMASDMLV 584
RK M+ + + +I + ++ K +++K EKP + + + ++E + L
Sbjct: 260 RKNMEAGNAPACMMEEWIHEMIETRKYKSENKEGAEKPSV-LIREFSDEEISLTFLSFLF 318
Query: 583 AGVDTTSNTMSATLYLMAINQDKQQKLREEVMS-KNG------------KRSYLRACIKE 443
A D TS+ M+ L+A + D QK+REE + + G K +Y RA +KE
Sbjct: 319 ASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKE 378
Query: 442 AMRILPVVSGNMRRTTKEYNIL-GYHIPENVDIAFAHQHLSMMEKYYPRPTEFIPERWLT 266
+R+ P V R K + I Y +P++ + K YP P F P+RW
Sbjct: 379 CLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRWAP 438
Query: 265 NKSDPLYYGNAHPFANSPFGFGVRSCIGRRIA 170
N P FG G C+G+R A
Sbjct: 439 NG-----LAEQSPKNWMVFGNGPHVCLGQRYA 465
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 55.2 bits (127), Expect = 1e-08
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 25/197 (12%)
Frame = -2
Query: 592 MLVAGVDTTSNTMSATLYLMAINQDKQQKLREE---VMSKNGKRSY--------LRACIK 446
+L+AG T++ T+ L L+ + + L EE V+ +N + + L I+
Sbjct: 285 LLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQYKDMPLLNYVIQ 344
Query: 445 EAMRILPVVSGNMRRTTKEYNILGYHI--PENVDIAFAHQHLSMMEKYYPRPTEFIPERW 272
E +R+ P + +MR+ ++ + G I P N + A + E+Y+ T+F P+RW
Sbjct: 345 ETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHATDFDPKRW 404
Query: 271 -----LTNKSDPLYY-------GNAHPFANSPFGFGVRSCIGRRIAELEVETFLSKIVEN 128
++ + Y G A P+ PFG G CIG + A + + T +SK V +
Sbjct: 405 NDRVNEDENAEQIDYGYGLVTKGAASPYL--PFGAGRHRCIGEQFAYMHLSTIISKFVHD 462
Query: 127 FQVEWSGSSPRVEQTSI 77
+ G P V+ +S+
Sbjct: 463 YTWTLIGKVPNVDYSSM 479
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 448 KEAMRILPVVSGNMRRTTKEYNILGYHIPENVDIAFAHQHLSMMEKYY 305
K+A+ LP N+R Y ++ Y+IP VD AFA+ + +E Y+
Sbjct: 166 KQALLPLPGKQINVRSVVPFYKLMPYNIPFAVD-AFAYGAIDGVEAYF 212
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = -2
Query: 709 IKKALDDIKMNKSKSDDEKPVLEKLLDINEEYAYIMASDMLVAG--VDTTSNT-MSATLY 539
+ L ++ + S+S++ P+ E+++DI E YA+ + + G +DT +S L
Sbjct: 1164 VSSTLKNLTLRFSQSENVFPI-EQIIDITERYAFDQQGEAVATGWVIDTFLGAGVSHELI 1222
Query: 538 LMAINQ--DKQQK 506
+ +NQ D+++K
Sbjct: 1223 FIVLNQLYDRREK 1235
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 96 LGDDPDH--ST*KFSTIFDKNVSTSNSAMRRPIQLRTPKPNGEFAN 227
+ ++P H S+ K ST D N + S ++ ++ PKP+G+F N
Sbjct: 114 MSEEPKHHDSSNKESTNLD-NSNMDESENQKNFKIEEPKPSGDFRN 158
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = -2
Query: 688 IKMNKSKSDDEKPVLEKLLDINEEYAYI--MASDMLVAGVDTTSNTMSATLYLMAINQDK 515
I+ ++ + D + L K+LD +A + + + +A + + L + D+
Sbjct: 237 IRSSEFSARDVELELSKVLDSPVTHALVPELGLQLAMASCNALLRYLGPALLNPDMEDDR 296
Query: 514 QQKLREEVMSKNGKRSYLRACIK--EAMRILPVVSGNMRRTTKEYNILGY 371
+ R+ + + Y+R I ++ +LP +GN +T Y +L +
Sbjct: 297 ENTSRKLHLYHHNLEQYMRLDIAAVRSLNLLPPPNGNAHKTMSLYGLLNH 346
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 405 DAPQRSTTFLDIIYRKMSTLHLLINICR*WRNTIQDRRSSFLN 277
D + TF ++ +R + T HLL+N C ++D R L+
Sbjct: 86 DDELENETFSELPFRWLETAHLLLNFCADDIEDVEDIRRILLD 128
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 3.4
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Frame = -2
Query: 640 KLLDINEEYAYIMASDMLVAGVDTTSN--TMSATLYLMAINQDKQQKLREEVMSKNGKRS 467
+L EE AY + +L G+ S +S + + ++Q Q+ E V+ + + +
Sbjct: 3146 RLKSFPEEDAYRLIVALLNDGLQYISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREA 3205
Query: 466 YLRACIKEAMRILPVVSGNMRRTTKEY-NILGYHIPENVDIAFAHQHLSMMEKYYPRPTE 290
+LR ++ + +L V +R K++ NIL P+ + + +LS + E
Sbjct: 3206 FLRDFVETKLDLLTYVD-KLRMWRKKFENILDQR-PKFLHLEQCSLYLSEFQHQKFDEVE 3263
Query: 289 FIPERWLTNKSD 254
IP ++L +K++
Sbjct: 3264 -IPGQYLLDKNN 3274
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 727 NLTKYFIKKALDDIKMNKSK-SDDEKPVLEKLLDINEE 617
N T +K+ L D+K NKSK ++D++ E+L + E+
Sbjct: 272 NATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEK 309
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = -2
Query: 709 IKKALDDIKMNKSKSDDEKPVLEKLLDINEEYAYIMASDMLVAGVDTTSNTMSATLYLMA 530
+ ++ +K +S + V E EE+ + + + + V T N+ T+Y+
Sbjct: 549 VVRSRPSLKQRPLRSAEYVRVCELKCLQEEEFDNKVLLEQVESNVQTDHNSPCNTIYVGN 608
Query: 529 I-NQDKQQKLREEVMSKNGKRSYLRACIK 446
+ N D+++KLR ++ + ++ Y R C K
Sbjct: 609 LSNPDQEKKLR---LAFSKEKGYRRLCFK 634
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 625 NEEYAYIMASDMLVAGVDTTSNTMSATLYLMAINQDKQQKLREEVMSKNGKR 470
N+ ++ SD L+ D+T + + T+ + K LR + ++NGKR
Sbjct: 38 NDIDSFEQQSDFLLVDHDSTLDPVPVTILTGFLGAGKTSLLRSILENRNGKR 89
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 135 TIFDKNVSTSNSAMRRPIQLRTPKPNGEFA 224
TI K +S S + P+Q TP + E+A
Sbjct: 335 TIVSKTISASTTQQTEPLQQTTPSSDFEYA 364
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 135 TIFDKNVSTSNSAMRRPIQLRTPKPNG 215
T++DKN T ++A+R +R P NG
Sbjct: 114 TLYDKNPLTRSTAIRVMSSIRVPAING 140
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 292 EFIPERWLTNKSDPLYYGNAHPFANSPF 209
EF+PE WL ++ D + N + N F
Sbjct: 122 EFLPEEWLLSRLDCKFLENINVVPNGDF 149
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 274 SVQE*TPSVLDSISPSSTNVDEQMQCRHFPVYDIQECCTPL 396
SV + P V+D + S N+ + + D +ECC L
Sbjct: 393 SVNDEKPQVIDQTNASLVNLRKSIYLTIMSSVDFEECCHKL 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,938
Number of Sequences: 5004
Number of extensions: 82017
Number of successful extensions: 304
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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