Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16i03
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.85 
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   2.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   7.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   7.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.9  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   7.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   7.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.9  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 526 QQPKPTPKAFSIHDLIGDGFLLAVPKF 446
           + P  TP+   IH+L+G   LLA P F
Sbjct: 326 KSPYHTPEPDCIHELLGHMPLLADPSF 352


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +2

Query: 332 VVVTTLMACF*ISFRYKWLPNIFRP-----PKFPIQSLFN 436
           + +  L+A    +F Y  LPN+ +P     P FP Q  FN
Sbjct: 5   IFIFALLATICAAFAYVPLPNVPQPGRRPFPTFPGQGPFN 44


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 129 CGLSFFISTILLPFQNSFCWSGKV 200
           C L FF+  +++PF    C S ++
Sbjct: 339 CWLPFFLMYVIVPFCPDCCPSDRM 362


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 129 CGLSFFISTILLPFQNSFCWSGKV 200
           C L FF+  +++PF    C S ++
Sbjct: 339 CWLPFFLMYVIVPFCPDCCPSDRM 362


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 543 NASSFGG*PKRLNRIDLS 596
           N   FGG PKR+  I LS
Sbjct: 192 NIEWFGGNPKRITLIGLS 209


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 543 NASSFGG*PKRLNRIDLS 596
           N   FGG PKR+  I LS
Sbjct: 63  NIEWFGGNPKRITLIGLS 80


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 584 PVKPFRSSSKRTSVSG 537
           PVK  RSSS  T+ SG
Sbjct: 279 PVKQHRSSSASTTCSG 294


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 129 CGLSFFISTILLPFQNSFCWSGKV 200
           C L FF+  +++PF    C S ++
Sbjct: 339 CWLPFFLMYVIVPFCPDCCPSDRM 362


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 543 NASSFGG*PKRLNRIDLS 596
           N   FGG PKR+  I LS
Sbjct: 192 NIEWFGGNPKRITLIGLS 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,608
Number of Sequences: 438
Number of extensions: 4962
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)