Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16h21
(393 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 105 4e-23
AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein. 105 4e-23
AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein. 105 4e-23
BC062637-1|AAH62637.1| 614|Homo sapiens KIAA0907 protein. 30 2.4
BC027182-1|AAH27182.1| 241|Homo sapiens KIAA0907 protein protein. 30 2.4
AY112682-1|AAM51857.1| 384|Homo sapiens BLOM7 gamma protein. 30 2.4
AY112681-1|AAM51856.1| 564|Homo sapiens BLOM7 beta protein. 30 2.4
AY112680-1|AAM51855.1| 614|Homo sapiens BLOM7 alpha protein. 30 2.4
AL355388-5|CAH72625.1| 384|Homo sapiens novel protein protein. 30 2.4
AL355388-4|CAH72624.1| 564|Homo sapiens novel protein protein. 30 2.4
AL355388-3|CAH72623.1| 614|Homo sapiens novel protein protein. 30 2.4
AB020714-1|BAA74930.2| 569|Homo sapiens KIAA0907 protein protein. 30 2.4
>BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46 protein.
Length = 1031
Score = 105 bits (253), Expect = 4e-23
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = -3
Query: 244 SMEALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIK 65
S EAL ISEYSEA IT+RGTY PGK P EGERK+YLAIES+ ELAV KAK+EITRLIK
Sbjct: 951 SKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIK 1010
Query: 64 EELLKLQTS 38
EEL++LQ S
Sbjct: 1011 EELIRLQNS 1019
>AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein.
Length = 1031
Score = 105 bits (253), Expect = 4e-23
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = -3
Query: 244 SMEALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIK 65
S EAL ISEYSEA IT+RGTY PGK P EGERK+YLAIES+ ELAV KAK+EITRLIK
Sbjct: 951 SKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIK 1010
Query: 64 EELLKLQTS 38
EEL++LQ S
Sbjct: 1011 EELIRLQNS 1019
>AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein.
Length = 1058
Score = 105 bits (253), Expect = 4e-23
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = -3
Query: 244 SMEALALISEYSEAGITVRGTYVQPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIK 65
S EAL ISEYSEA IT+RGTY PGK P EGERK+YLAIES+ ELAV KAK+EITRLIK
Sbjct: 978 SKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIK 1037
Query: 64 EELLKLQTS 38
EEL++LQ S
Sbjct: 1038 EELIRLQNS 1046
>BC062637-1|AAH62637.1| 614|Homo sapiens KIAA0907 protein.
Length = 614
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>BC027182-1|AAH27182.1| 241|Homo sapiens KIAA0907 protein protein.
Length = 241
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>AY112682-1|AAM51857.1| 384|Homo sapiens BLOM7 gamma protein.
Length = 384
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>AY112681-1|AAM51856.1| 564|Homo sapiens BLOM7 beta protein.
Length = 564
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>AY112680-1|AAM51855.1| 614|Homo sapiens BLOM7 alpha protein.
Length = 614
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>AL355388-5|CAH72625.1| 384|Homo sapiens novel protein protein.
Length = 384
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>AL355388-4|CAH72624.1| 564|Homo sapiens novel protein protein.
Length = 564
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>AL355388-3|CAH72623.1| 614|Homo sapiens novel protein protein.
Length = 614
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 129 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 187
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 188 KAATGTSPTFN 198
>AB020714-1|BAA74930.2| 569|Homo sapiens KIAA0907 protein protein.
Length = 569
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 223 ISEYSEAGITVRGTYV---QPGKAPPEGERKLYLAIESSQELAVAKAKSEITRLIKEELL 53
IS S A ++ RG ++ + K P G+R LYL ++ V +A + I +I ++
Sbjct: 134 ISRLSGAAVSTRGRFMTTEEKAKVGP-GDRPLYLHVQGQTRELVDRAVNRIKEIITNGVV 192
Query: 52 KLQTSAHHMVN 20
K T N
Sbjct: 193 KAATGTSPTFN 203
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,577,545
Number of Sequences: 237096
Number of extensions: 832963
Number of successful extensions: 2177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2177
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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