Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16h21
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.011
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   0.72 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   0.72 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   0.72 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.011
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 57  SSSLMSRVISDLALATASSCELSMARYSLRSPSGGALPGWTYVPRTVIP 203
           S++LMS+   +  ++  S   +S    ++RSP+GG LP     P   IP
Sbjct: 373 STALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP 421


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 143 QAVPRHRELAGAGRCQSQIRDNAAHQGRAPQTPDLGPSH 27
           + +PR R +         I  NA ++ R PQ P  GP+H
Sbjct: 142 EQIPRFRYIGPPTPFPRFIPPNA-YRFRPPQNPRFGPTH 179


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 143 QAVPRHRELAGAGRCQSQIRDNAAHQGRAPQTPDLGPSH 27
           + +PR R +         I  NA ++ R PQ P  GP+H
Sbjct: 142 EQIPRFRYIGPPTPFPRFIPPNA-YRFRPPQNPRFGPTH 179


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 143 QAVPRHRELAGAGRCQSQIRDNAAHQGRAPQTPDLGPSH 27
           + +PR R +         I  NA ++ R PQ P  GP+H
Sbjct: 380 EQIPRFRYIGPPTPFPRFIPPNA-YRFRPPQNPRFGPTH 417


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 156 GGALPGWTYVPRTVIPASEYSLIR 227
           GGA  G T V R V+P+    L+R
Sbjct: 140 GGASRGCTAVLRCVVPSFVKDLVR 163


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 156 GGALPGWTYVPRTVIPASEYSLIR 227
           GGA  G T V R V+P+    L+R
Sbjct: 140 GGASRGCTAVLRCVVPSFVKDLVR 163


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 56   PQTPDLGPSHGQPKLDI 6
            PQ   L PS  QP+L +
Sbjct: 1280 PQQQQLPPSSPQPRLTV 1296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,790
Number of Sequences: 438
Number of extensions: 1461
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)