Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16h15
(246 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 93 5e-22
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 93 5e-22
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 0.74
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 2.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 2.2
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 21 2.2
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 3.0
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 20 5.2
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 20 5.2
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 20 5.2
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 19 9.1
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 93.1 bits (221), Expect = 5e-22
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = -1
Query: 246 ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 97
ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300
Score = 29.5 bits (63), Expect = 0.006
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 240 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 151
YK I C+ I K +G ++++G +NV+R
Sbjct: 53 YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 93.1 bits (221), Expect = 5e-22
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = -1
Query: 246 ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 97
ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300
Score = 29.5 bits (63), Expect = 0.006
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 240 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 151
YK I C+ I K +G ++++G +NV+R
Sbjct: 53 YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 0.74
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 107 LISSYKTSTKAPPVPLRTLEKAPL 178
L++++KT T+ P + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 12 VSNNT*SEGSGCDTESHRNYGNNSY 86
+SNNT + ++ NY NN+Y
Sbjct: 84 LSNNTIHNNNYKYNYNNNNYNNNNY 108
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 12 VSNNT*SEGSGCDTESHRNYGNNSY 86
+SNNT + ++ NY NN+Y
Sbjct: 84 LSNNTIHNNNYKYNYNNNNYNNNNY 108
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.0 bits (42), Expect = 2.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 36 GSGCDTESHRNYGNNSYVRF 95
GS D+++ N+G S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 20.6 bits (41), Expect = 3.0
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +3
Query: 57 SHRNYGNNSYVRFTGP 104
++ YG N+ +R+ GP
Sbjct: 418 AYNTYGRNAGLRYRGP 433
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 19.8 bits (39), Expect = 5.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 86 R*IYRTFLISSYKTS 130
R I R FLIS KTS
Sbjct: 75 RYIIRMFLISQQKTS 89
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 19.8 bits (39), Expect = 5.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 86 R*IYRTFLISSYKTS 130
R I R FLIS KTS
Sbjct: 58 RYIIRMFLISQQKTS 72
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 19.8 bits (39), Expect = 5.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -1
Query: 84 KNCYHNFYVIPCR 46
+N YH F ++P R
Sbjct: 299 QNSYHEFQILPER 311
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 19.0 bits (37), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 216 ATIAKTEGTSAFFKG 172
AT+ +T SA FKG
Sbjct: 470 ATVIQTSELSATFKG 484
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,254
Number of Sequences: 438
Number of extensions: 837
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4275738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
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