Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16h09
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...   119   4e-28
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    51   2e-07
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    31   0.26 
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    30   0.46 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   3.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   4.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   5.6  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    26   7.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   9.9  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  119 bits (287), Expect = 4e-28
 Identities = 55/141 (39%), Positives = 84/141 (59%)
 Frame = -2

Query: 815 ELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAI 636
           EL++++ + ++  KNYQVWHHR+ ++   ++   ELE T      D KNYH W +R W +
Sbjct: 96  ELEWLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWIL 155

Query: 635 KTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVK 456
           + F  Y +EL   + L+  D+ NNSAWN R++V+           ++E+ Y  +KI F  
Sbjct: 156 QNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILFAP 215

Query: 455 NNESAWNYLRGLLIHDKRGLS 393
           +N+SAWNYL G+L  DK G S
Sbjct: 216 DNQSAWNYLCGVL--DKSGPS 234



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
 Frame = -2

Query: 794 VIKNSPKNYQVWHHR-RVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLY 618
           +I N+P +Y VW +R ++L         ELE   +      KNY  W HRQ  +     Y
Sbjct: 68  LIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKILSLTKNY 127

Query: 617 EKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAW 438
           E+EL+F   +   D +N   W+ R +++ N   +S     QE+  T E +     N SAW
Sbjct: 128 ERELEFTKKMFEIDSKNYHVWSYRVWILQNFNDYS-----QELKLTNELLEKDIYNNSAW 182

Query: 437 NY 432
           N+
Sbjct: 183 NH 184



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -2

Query: 710 LELTGDALLQDPKNYHAWQHR-QWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVV 534
           L LTG  ++ +P +Y  W +R Q    T    + EL+++D +  D  +N   W+ R  ++
Sbjct: 62  LNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKIL 121

Query: 533 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 432
           +    +     ++E+ +T +       N   W+Y
Sbjct: 122 SLTKNY-----ERELEFTKKMFEIDSKNYHVWSY 150


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
 Frame = -2

Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTM--ELELTGDALLQDPKNYHAWQH 651
           L  EL YV + +K  PK Y +++HRR  +E    P    E+ +T   L  D +N+H W +
Sbjct: 90  LDNELKYVLSKMKVFPKVYWIFNHRRWCLENAPYPNWNYEMMITEKLLSADARNFHGWHY 149

Query: 650 RQWAIKTF------GLYEKELDFVDNLITDDVRNNSAWNQRYFVV----------NNNLG 519
           R++ +          L +KE+++  + I  +  N SA + R  ++          N+   
Sbjct: 150 RRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFSALHNRTKLIETILNLEADPNSQKA 209

Query: 518 WSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIH 411
            +  I +QE+    + +    ++ S W Y R L+ H
Sbjct: 210 LAKQILEQELDMIHQAVFTDPDDSSVWIYHRWLMGH 245



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
 Frame = -2

Query: 782 SPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQD-----------PKNYHAWQHRQWAI 636
           +P+ Y VW++RR ++     P + L    D L  +           PK Y  + HR+W +
Sbjct: 59  NPETYSVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCL 118

Query: 635 KT--FGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNN-NLGWSDLICQQEVCYTLEKIN 465
           +   +  +  E+   + L++ D RN   W+ R +VV+      +  + ++E+ YT   I 
Sbjct: 119 ENAPYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIA 178

Query: 464 FVKNNESA 441
              +N SA
Sbjct: 179 TNFSNFSA 186


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -2

Query: 779 PKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 600
           PK+   WH   ++    +D    L+   +AL   P N   W    +     GLY+   D 
Sbjct: 73  PKSQFCWHALAIVYRETKDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDN 132

Query: 599 VDNLITDDVRN 567
            + L+  D  N
Sbjct: 133 WNRLLQLDSSN 143


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -2

Query: 377 TSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVELCQA---LATRYDKI 207
           +SF  E  +N      + AF  D C   + KK T   HN D  + LC A   L  R    
Sbjct: 345 SSFFNEFVQNNLE--IIAAFNYD-CYTLLFKKITEAIHNNDTPIPLCCAKILLYARRQLT 401

Query: 206 RSKYWNYLCE 177
           R   WN L +
Sbjct: 402 RMARWNNLID 411



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 482 CNTLLADKSNPTSLNYCSLQSIADSTLNYY 571
           CN +L+   NP +L +    SI D  LN +
Sbjct: 611 CNYVLSSSKNPMNLLFTLHNSITDGKLNVH 640


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -2

Query: 374 SFCEELYKNKCRSPFLLAFIIDVC-EDAIKKKDTNCFHNADRAVELCQALATRYDK---I 207
           + C++L +N CR+P       + C + A+   D  C  N  R   L   L   Y K   I
Sbjct: 283 TLCKKLARNACRTPCCDKLFCEECIQTALLDSDFEC-PNCHRKDVLLDTLNPDYQKQREI 341

Query: 206 RSKYWNYLCERYKKYQSEQLSNDNKT 129
            +   + L    K       S+DN T
Sbjct: 342 EAVVKSVLGSNSKNSDKVGTSDDNNT 367


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 539 VVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEE 360
           + +    WS    +Q+V  TL +INFV  N           I  K G   ++++ +    
Sbjct: 577 IKSGTFSWSKKTLKQQVTPTLRQINFVAKNGEL------TCIFGKVGAGKSSLLEACMGN 630

Query: 359 LYKN 348
           +YKN
Sbjct: 631 MYKN 634


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 689 LLQDPKNYHAWQHRQWAI-KTFGLYEKELD 603
           LLQ+ K Y  W+ R  A+ K FG  E +LD
Sbjct: 119 LLQEAKTYEEWKERARALDKYFGNDEWKLD 148


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 485 NTLLADKSNPTSLNYCSLQSIADSTLNYYERR 580
           N+   +  NPT +N CS     D+T N  +++
Sbjct: 222 NSSTNESPNPTDINVCSNDDATDNTENNLKKK 253


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = -3

Query: 304 ARMLLKKKIQTASTMQTELWSYVRRWPLDTTKLEVNIGIIYVKDTRNTKVNSLVMTIKQT 125
           A +LLK   Q + T + ++W+ + R   D+    +   I YVK+     +      +   
Sbjct: 356 ADLLLKSNPQVSPTSERQVWAKIYR---DSQINILQDSITYVKNYMEESLQKTYKPLPNL 412

Query: 124 I**LMNNSLFYYICNH 77
           +  L+ NS+  ++  H
Sbjct: 413 LQYLILNSISIFLLQH 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,773
Number of Sequences: 5004
Number of extensions: 75664
Number of successful extensions: 240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)