Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16h09
(825 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transfer... 245 1e-64
L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transfer... 245 1e-64
BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CA... 245 1e-64
BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CA... 245 1e-64
BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein. 245 1e-64
BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein. 168 2e-41
Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl transf... 69 2e-11
CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein. 69 2e-11
BC003093-1|AAH03093.1| 567|Homo sapiens Rab geranylgeranyltrans... 69 2e-11
BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein. 36 0.24
AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransfera... 36 0.24
AL162412-1|CAI10944.1| 350|Homo sapiens protein prenyltransfera... 36 0.24
>L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 245 bits (600), Expect = 1e-64
Identities = 115/234 (49%), Positives = 159/234 (67%), Gaps = 1/234 (0%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQ 645
L E++Y+ A+I+ PKNYQVWHHRRVLVEWL+DP+ ELE D L QD KNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 644 WAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKI 468
W I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 467 NFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIK 288
V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++D+ ED ++
Sbjct: 268 KLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLE 324
Query: 287 KKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 126
+ N ++A+ELC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 72.5 bits (170), Expect = 2e-12
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Frame = -2
Query: 791 IKNSPKNYQVWHHRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE 615
I+ + NY VWH RRVL++ LQ D E+ + + PKNY W HR+ ++
Sbjct: 124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 183
Query: 614 KELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 435
+EL+F+ +++ D +N AW R +V+ W + E+ Y + + N S WN
Sbjct: 184 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWN 238
Query: 434 YLRGLLIHDKRGLSGNAVI 378
R +I + G + AV+
Sbjct: 239 Q-RYFVISNTTGYNDRAVL 256
Score = 35.5 bits (78), Expect = 0.24
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = -2
Query: 782 SPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKE 609
S K V+ + R +++ + +LT DA+ + NY W R+ +K+ L+E E
Sbjct: 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-E 151
Query: 608 LDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 432
++++ +I + +N W+ R +V W QE+ + + +N N AW +
Sbjct: 152 MNYITAIIEEQPKNYQVWHHRRVLVE----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 245 bits (600), Expect = 1e-64
Identities = 115/234 (49%), Positives = 159/234 (67%), Gaps = 1/234 (0%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQ 645
L E++Y+ A+I+ PKNYQVWHHRRVLVEWL+DP+ ELE D L QD KNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 644 WAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKI 468
W I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 467 NFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIK 288
V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++D+ ED ++
Sbjct: 268 KLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLE 324
Query: 287 KKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 126
+ N ++A+ELC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 72.5 bits (170), Expect = 2e-12
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Frame = -2
Query: 791 IKNSPKNYQVWHHRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE 615
I+ + NY VWH RRVL++ LQ D E+ + + PKNY W HR+ ++
Sbjct: 124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 183
Query: 614 KELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 435
+EL+F+ +++ D +N AW R +V+ W + E+ Y + + N S WN
Sbjct: 184 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWN 238
Query: 434 YLRGLLIHDKRGLSGNAVI 378
R +I + G + AV+
Sbjct: 239 Q-RYFVISNTTGYNDRAVL 256
Score = 35.5 bits (78), Expect = 0.24
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = -2
Query: 782 SPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKE 609
S K V+ + R +++ + +LT DA+ + NY W R+ +K+ L+E E
Sbjct: 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-E 151
Query: 608 LDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 432
++++ +I + +N W+ R +V W QE+ + + +N N AW +
Sbjct: 152 MNYITAIIEEQPKNYQVWHHRRVLVE----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 245 bits (600), Expect = 1e-64
Identities = 115/234 (49%), Positives = 159/234 (67%), Gaps = 1/234 (0%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQ 645
L E++Y+ A+I+ PKNYQVWHHRRVLVEWL+DP+ ELE D L QD KNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 644 WAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKI 468
W I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 467 NFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIK 288
V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++D+ ED ++
Sbjct: 268 KLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLE 324
Query: 287 KKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 126
+ N ++A+ELC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 72.5 bits (170), Expect = 2e-12
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Frame = -2
Query: 791 IKNSPKNYQVWHHRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE 615
I+ + NY VWH RRVL++ LQ D E+ + + PKNY W HR+ ++
Sbjct: 124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 183
Query: 614 KELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 435
+EL+F+ +++ D +N AW R +V+ W + E+ Y + + N S WN
Sbjct: 184 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWN 238
Query: 434 YLRGLLIHDKRGLSGNAVI 378
R +I + G + AV+
Sbjct: 239 Q-RYFVISNTTGYNDRAVL 256
Score = 35.5 bits (78), Expect = 0.24
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = -2
Query: 782 SPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKE 609
S K V+ + R +++ + +LT DA+ + NY W R+ +K+ L+E E
Sbjct: 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-E 151
Query: 608 LDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 432
++++ +I + +N W+ R +V W QE+ + + +N N AW +
Sbjct: 152 MNYITAIIEEQPKNYQVWHHRRVLVE----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 245 bits (600), Expect = 1e-64
Identities = 115/234 (49%), Positives = 159/234 (67%), Gaps = 1/234 (0%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQ 645
L E++Y+ A+I+ PKNYQVWHHRRVLVEWL+DP+ ELE D L QD KNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 644 WAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKI 468
W I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 467 NFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIK 288
V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++D+ ED ++
Sbjct: 268 KLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLE 324
Query: 287 KKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 126
+ N ++A+ELC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 72.5 bits (170), Expect = 2e-12
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Frame = -2
Query: 791 IKNSPKNYQVWHHRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE 615
I+ + NY VWH RRVL++ LQ D E+ + + PKNY W HR+ ++
Sbjct: 124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 183
Query: 614 KELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 435
+EL+F+ +++ D +N AW R +V+ W + E+ Y + + N S WN
Sbjct: 184 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWN 238
Query: 434 YLRGLLIHDKRGLSGNAVI 378
R +I + G + AV+
Sbjct: 239 Q-RYFVISNTTGYNDRAVL 256
Score = 35.5 bits (78), Expect = 0.24
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = -2
Query: 782 SPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKE 609
S K V+ + R +++ + +LT DA+ + NY W R+ +K+ L+E E
Sbjct: 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-E 151
Query: 608 LDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 432
++++ +I + +N W+ R +V W QE+ + + +N N AW +
Sbjct: 152 MNYITAIIEEQPKNYQVWHHRRVLVE----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein.
Length = 376
Score = 245 bits (600), Expect = 1e-64
Identities = 115/234 (49%), Positives = 159/234 (67%), Gaps = 1/234 (0%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQ 645
L E++Y+ A+I+ PKNYQVWHHRRVLVEWL+DP+ ELE D L QD KNYHAWQHRQ
Sbjct: 145 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 204
Query: 644 WAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKI 468
W I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I
Sbjct: 205 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 264
Query: 467 NFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIK 288
V +NESAWNYL+G+L RGLS + + +L + SP+L+AF++D+ ED ++
Sbjct: 265 KLVPHNESAWNYLKGIL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLE 321
Query: 287 KKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 126
+ N ++A+ELC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 322 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 373
Score = 72.5 bits (170), Expect = 2e-12
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Frame = -2
Query: 791 IKNSPKNYQVWHHRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE 615
I+ + NY VWH RRVL++ LQ D E+ + + PKNY W HR+ ++
Sbjct: 121 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 180
Query: 614 KELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 435
+EL+F+ +++ D +N AW R +V+ W + E+ Y + + N S WN
Sbjct: 181 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWN 235
Query: 434 YLRGLLIHDKRGLSGNAVI 378
R +I + G + AV+
Sbjct: 236 Q-RYFVISNTTGYNDRAVL 253
Score = 35.5 bits (78), Expect = 0.24
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = -2
Query: 782 SPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKE 609
S K V+ + R +++ + +LT DA+ + NY W R+ +K+ L+E E
Sbjct: 90 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-E 148
Query: 608 LDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 432
++++ +I + +N W+ R +V W QE+ + + +N N AW +
Sbjct: 149 MNYITAIIEEQPKNYQVWHHRRVLVE----WL-RDPSQELEFIADILNQDAKNYHAWQH 202
>BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein.
Length = 214
Score = 168 bits (409), Expect = 2e-41
Identities = 74/135 (54%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQ 645
L E++Y+ A+I+ PKNYQVWHHRRVLVEWL+DP+ ELE D L QD KNYHAWQHRQ
Sbjct: 57 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 116
Query: 644 WAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLE-K 471
W I+ F L++ EL +VD L+ +DVRNNS WNQRYFV++N G++D + ++EV +
Sbjct: 117 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQLVISFT 176
Query: 470 INFVKNNESAWNYLR 426
+FV N + YLR
Sbjct: 177 CSFVTNMFACLPYLR 191
Score = 72.5 bits (170), Expect = 2e-12
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Frame = -2
Query: 791 IKNSPKNYQVWHHRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE 615
I+ + NY VWH RRVL++ LQ D E+ + + PKNY W HR+ ++
Sbjct: 33 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 92
Query: 614 KELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 435
+EL+F+ +++ D +N AW R +V+ W + E+ Y + + N S WN
Sbjct: 93 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWN 147
Query: 434 YLRGLLIHDKRGLSGNAVI 378
R +I + G + AV+
Sbjct: 148 Q-RYFVISNTTGYNDRAVL 165
Score = 34.3 bits (75), Expect = 0.54
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Frame = -2
Query: 764 VWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDN 591
V+ + R +++ + +LT DA+ + NY W R+ +K+ L+E E++++
Sbjct: 8 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITA 66
Query: 590 LITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 432
+I + +N W+ R +V W QE+ + + +N N AW +
Sbjct: 67 IIEEQPKNYQVWHHRRVLVE----WL-RDPSQELEFIADILNQDAKNYHAWQH 114
>Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 567
Score = 69.3 bits (162), Expect = 2e-11
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDP--TMELELTGDALLQDPKNYHAWQH 651
++ EL ++E+ ++ +PK+Y WHHR L+ L +P T ELEL L D +N+H W +
Sbjct: 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDY 148
Query: 650 RQW-AIKTFGLYEKELDFVDNLITDDVRNNSAWNQR 546
R++ A + +EL F D+LIT + N S+W+ R
Sbjct: 149 RRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYR 184
>CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein.
Length = 567
Score = 69.3 bits (162), Expect = 2e-11
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDP--TMELELTGDALLQDPKNYHAWQH 651
++ EL ++E+ ++ +PK+Y WHHR L+ L +P T ELEL L D +N+H W +
Sbjct: 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDY 148
Query: 650 RQW-AIKTFGLYEKELDFVDNLITDDVRNNSAWNQR 546
R++ A + +EL F D+LIT + N S+W+ R
Sbjct: 149 RRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYR 184
>BC003093-1|AAH03093.1| 567|Homo sapiens Rab
geranylgeranyltransferase, alpha subunit protein.
Length = 567
Score = 69.3 bits (162), Expect = 2e-11
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Frame = -2
Query: 824 LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDP--TMELELTGDALLQDPKNYHAWQH 651
++ EL ++E+ ++ +PK+Y WHHR L+ L +P T ELEL L D +N+H W +
Sbjct: 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDY 148
Query: 650 RQW-AIKTFGLYEKELDFVDNLITDDVRNNSAWNQR 546
R++ A + +EL F D+LIT + N S+W+ R
Sbjct: 149 RRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYR 184
>BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein.
Length = 403
Score = 35.5 bits (78), Expect = 0.24
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -2
Query: 713 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-----KELDFVDNLITDDVRNNSAWNQ 549
E+E+ G+A + P NY+AW HR W ++ + EL + + V ++S ++
Sbjct: 181 EMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHY 240
Query: 548 RYFVVNN 528
R F++ +
Sbjct: 241 RQFLLKS 247
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 812 LDYVEAVIKNSPKNYQVWHHRRVLV-EWLQDPTMELELTGDALLQDPKNYHAWQHRQWAI 636
+D ++ +P W+ R+ L+ +P +L L AL + PK+ W HR+W +
Sbjct: 89 IDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVL 148
Query: 635 K 633
+
Sbjct: 149 Q 149
>AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransferase
alpha subunit repeat containing 1 protein.
Length = 312
Score = 35.5 bits (78), Expect = 0.24
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -2
Query: 713 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-----KELDFVDNLITDDVRNNSAWNQ 549
E+E+ G+A + P NY+AW HR W ++ + EL + + V ++S ++
Sbjct: 180 EMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHY 239
Query: 548 RYFVVNN 528
R F++ +
Sbjct: 240 RQFLLKS 246
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 812 LDYVEAVIKNSPKNYQVWHHRRVLV-EWLQDPTMELELTGDALLQDPKNYHAWQHRQWAI 636
+D ++ +P W+ R+ L+ +P +L L AL + PK+ W HR+W +
Sbjct: 88 IDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVL 147
Query: 635 K 633
+
Sbjct: 148 Q 148
>AL162412-1|CAI10944.1| 350|Homo sapiens protein prenyltransferase
alpha subunit repeat containing 1 protein.
Length = 350
Score = 35.5 bits (78), Expect = 0.24
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -2
Query: 713 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-----KELDFVDNLITDDVRNNSAWNQ 549
E+E+ G+A + P NY+AW HR W ++ + EL + + V ++S ++
Sbjct: 101 EMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHY 160
Query: 548 RYFVVNN 528
R F++ +
Sbjct: 161 RQFLLKS 167
Score = 30.7 bits (66), Expect = 6.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 758 HHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIK 633
H + +++ +P +L L AL + PK+ W HR+W ++
Sbjct: 28 HMKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQ 69
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,149,914
Number of Sequences: 237096
Number of extensions: 2452502
Number of successful extensions: 9008
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8963
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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