Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16g23
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       82   7e-18
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.21 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.85 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   1.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   1.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   1.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 81.8 bits (193), Expect = 7e-18
 Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
 Frame = -2

Query: 799  LKVFVLDEADVMINRQ--GHQDQCIRIHKCLP-STCQMMFFSATYGTAVMQFAEIIVSNP 629
            ++  VLDEAD M++       ++ +     +P    Q + FSAT+   V   A   ++N 
Sbjct: 348  VQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNY 407

Query: 628  IIIRLLREEESLDNIKQ--YYVKCKSAEDKYRAICNIYGVI-TIGQAIIFCHTRKTASWL 458
            + + +     +  +++Q  Y V     +D  + I        T+G  ++F   +K A ++
Sbjct: 408  LFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFI 467

Query: 457  SEKMSKDGHSVAVLSGELTVEQRIAVLDRFRVGLEKVLITTNVLSRGIDVEQVTLVVNFD 278
            +  +S++ +    + G+    QR   L  F+ G   +L+ T V +RG+D++ V+ V+N+D
Sbjct: 468  AVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYD 527

Query: 277  MPMDMNRKADCETYLHRIGRTGRFGKAGIAINLIDSPQAMEICTDI 140
            +P  +      + Y+HRIGRTGR G  G A +  D  +   +  D+
Sbjct: 528  LPKGI------DEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDL 567


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +1

Query: 7   EHF*I*-KVEMSFFLSNIILIKPQS-FLFLLHLQYPVIEFSYQSVLQCL 147
           EHF +  K + + F++NI+     S F+ + H  +P  EF++ +V++C+
Sbjct: 265 EHFEMKIKRKHNVFVNNILAASACSLFVVIFHFAHPREEFNHWTVMRCV 313


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 189 AIPAFPNLPVLPILCRYVSQ 248
           AIP  P LP++P+ C  V Q
Sbjct: 781 AIPRIPILPMIPVYCVPVPQ 800


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 171 ESMRLIAIPAFPN-LPVLPILCRYVSQSAFLFMSMGMSKL 287
           E++++IA       LP +PI  RY+++   L +S  M K+
Sbjct: 349 ETLQMIASMKIKEALPHVPIFDRYINREYILVLSNKMQKM 388


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 171 ESMRLIAIPAFPN-LPVLPILCRYVSQSAFLFMSMGMSKL 287
           E++++IA       LP +PI  RY+++   L +S  M K+
Sbjct: 349 ETLQMIASMKIKEALPHVPIFDRYINREYILVLSNKMQKM 388


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 171 ESMRLIAIPAFPN-LPVLPILCRYVSQSAFLFMSMGMSKL 287
           E++++IA       LP +PI  RY+++   L +S  M K+
Sbjct: 349 ETLQMIASMKIKEALPHVPIFDRYINREYILVLSNKMQKM 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,590
Number of Sequences: 438
Number of extensions: 4510
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)