Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16g19
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035836-1|AAH35836.1|  439|Homo sapiens LOC374569 protein protein.    96   2e-19

>BC035836-1|AAH35836.1|  439|Homo sapiens LOC374569 protein protein.
          Length = 439

 Score = 95.9 bits (228), Expect = 2e-19
 Identities = 50/138 (36%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
 Frame = -3

Query: 696 LHDQLSRKVYILKVAPTITPELIRGVCEG-MEGVVLETYGNGNIPIKRKEIYKEIERAVK 520
           +H  + + V +L++ P I   L+R   +  ++GVV+ET+G+GN P K  ++ +E+  A +
Sbjct: 230 VHSSMEQDVGLLRLYPGIPAALVRAFLQPPLKGVVMETFGSGNGPTK-PDLLQELRVATE 288

Query: 519 NNVLVVNVTQCINGTVLGKAIYETGLLLVECGVVPAFDMTAEAAWAKLCYVLTKTELSYQ 340
             +++VN T C+ G V     Y  G+ +   GV+  FDMT+EAA AKL YVL +  LS  
Sbjct: 289 RGLVIVNCTHCLQGAVTTD--YAAGMAMAGAGVISGFDMTSEAALAKLSYVLGQPGLSLD 346

Query: 339 QKVELMKTNIRGELENPN 286
            + EL+  ++RGE+  P+
Sbjct: 347 VRKELLTKDLRGEMTPPS 364


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,930,119
Number of Sequences: 237096
Number of extensions: 2862426
Number of successful extensions: 5829
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5815
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)