Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16g15
         (785 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC023000-1|AAH23000.1|  226|Homo sapiens transmembrane protein 8...    54   8e-07
AK126545-1|BAC86586.1|  140|Homo sapiens protein ( Homo sapiens ...    53   1e-06
BC035692-1|AAH35692.1|  240|Homo sapiens transmembrane protein 8...    50   1e-05
BC017073-1|AAH17073.2|  220|Homo sapiens TMEM86A protein protein.      50   1e-05
AK074600-1|BAC11084.1|  240|Homo sapiens protein ( Homo sapiens ...    50   1e-05

>BC023000-1|AAH23000.1|  226|Homo sapiens transmembrane protein 86B
           protein.
          Length = 226

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 25/68 (36%), Positives = 37/68 (54%)
 Frame = -2

Query: 766 VPVYGMLLSTMAWXXXXXXXXXXXXXXLFLISDAILGYSLFGGPVPYKQVLVMSTYYLGQ 587
           V  YG++L  M W              LF +SD +L +  F  P+P+ ++++M+TYY  Q
Sbjct: 151 VAAYGLILMAMLWRGLAQGGSAGWGALLFTLSDGVLAWDTFAQPLPHARLVIMTTYYAAQ 210

Query: 586 LGIALSAL 563
           L I LSAL
Sbjct: 211 LLITLSAL 218


>AK126545-1|BAC86586.1|  140|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44581 fis, clone ADRGL2010315. ).
          Length = 140

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 25/68 (36%), Positives = 36/68 (52%)
 Frame = -2

Query: 766 VPVYGMLLSTMAWXXXXXXXXXXXXXXLFLISDAILGYSLFGGPVPYKQVLVMSTYYLGQ 587
           V  YG++L  M W              LF +SD +L +  F  P+P+  +++M+TYY  Q
Sbjct: 65  VAAYGLILMAMLWRGLAQGGSAGWGALLFTLSDGVLAWDTFAQPLPHAHLVIMTTYYAAQ 124

Query: 586 LGIALSAL 563
           L I LSAL
Sbjct: 125 LLITLSAL 132


>BC035692-1|AAH35692.1|  240|Homo sapiens transmembrane protein 86A
           protein.
          Length = 240

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = -2

Query: 682 FLISDAILGYSLFGGPVPYKQVLVMSTYYLGQLGIALSALDAR 554
           F+ISD  +  + F  PVPY + L+MSTYY+ Q+ +ALSA+++R
Sbjct: 186 FIISDLTIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESR 228


>BC017073-1|AAH17073.2|  220|Homo sapiens TMEM86A protein protein.
          Length = 220

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = -2

Query: 682 FLISDAILGYSLFGGPVPYKQVLVMSTYYLGQLGIALSALDAR 554
           F+ISD  +  + F  PVPY + L+MSTYY+ Q+ +ALSA+++R
Sbjct: 166 FIISDLTIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESR 208


>AK074600-1|BAC11084.1|  240|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90119 fis, clone HEMBA1006960. ).
          Length = 240

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = -2

Query: 682 FLISDAILGYSLFGGPVPYKQVLVMSTYYLGQLGIALSALDAR 554
           F+ISD  +  + F  PVPY + L+MSTYY+ Q+ +ALSA+++R
Sbjct: 186 FIISDLTIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESR 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,091,811
Number of Sequences: 237096
Number of extensions: 1708996
Number of successful extensions: 3522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3522
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)