Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16g13
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    27   0.16 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.86 

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 585 AVVPTRTDSQEVLPPVKADANKQ*HLDFRRINACQSI 695
           A V TR D+Q V+ P   +   Q HLD R I   Q+I
Sbjct: 142 AAVLTRQDTQSVIFPPVYEILPQHHLDSRVIQEAQNI 178


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 330 IWKDGYNYLKLIRGKDRDMNDKLLLSYYI*KSYMYE 223
           IW D     +L     RD+ND L + Y+I K+  YE
Sbjct: 58  IW-DQMTVKELANSAKRDINDVLNVLYFINKNDKYE 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,533
Number of Sequences: 438
Number of extensions: 4514
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)