Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16g04
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   2.5  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   3.2  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   7.5  

>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 603 NKNTYLSPPNKMLRHRNYPKNVRGPLTPASKLVLHPS 713
           NK   ++PP   L+H  +   V GP T A      PS
Sbjct: 34  NKTVTITPPKHGLKHSRHKNRVNGPRTFAFDECFAPS 70


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 655 IPKMYEVL*HPQVNLYYILPATRQYFCKPHHEAQLSSP 768
           + K++ VL HP +N    L    +YF K  H+     P
Sbjct: 210 VTKVFNVLDHPDINDSTCLTKEARYFVKEQHKKLSRKP 247


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 296 FANTSPSKSSASLNQRPDPNHGSL*RSGEKLSKHNIKMSTNDY---LIIRDHEDYSIRNV 466
           + +T    S+  +  R D    S   SGEK +K NI  STN Y    I +  E +   + 
Sbjct: 524 YYSTDTDVSANVMGNRHDEVVFSDTASGEKNTKLNIDESTNYYNTDSIDKVGEPFDEISS 583

Query: 467 GYNVIING 490
           GY+ ++NG
Sbjct: 584 GYDDLMNG 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,431,045
Number of Sequences: 5004
Number of extensions: 72755
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)