Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16g02
(920 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.13
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 30 0.53
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.93
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.93
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.7
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 3.7
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.9
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 26 6.5
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 6.5
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 6.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.5
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 26 6.5
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 26 8.6
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 8.6
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 8.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 8.6
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/83 (28%), Positives = 46/83 (55%)
Frame = -2
Query: 889 TSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVK 710
+SSI F++ S++ S+ + S+ +S ST + S + STS PS++S+S+
Sbjct: 566 SSSIPSTFSSVSSILSSSTSSPSSTSLSI-----SSSSTSSTFS-SASTSSPSSISSSIS 619
Query: 709 KNSRALLTVTRSVNHVLTTSRSL 641
+S L + T S + ++ +S S+
Sbjct: 620 SSSTILSSPTPSTSSLMISSSSI 642
Score = 27.1 bits (57), Expect = 3.7
Identities = 28/97 (28%), Positives = 46/97 (47%)
Frame = -2
Query: 889 TSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVK 710
TSS E +NTS + + T TSL + ++ S +L ++S+ ST T+
Sbjct: 806 TSSTNE-YNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAYTTDS 864
Query: 709 KNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPLTPS 599
S LT + V+++S S S L+ +P+T S
Sbjct: 865 VTSTTALTSQGPSSSVVSSSLSSTTS-LSTSIPVTSS 900
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.17
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = -2
Query: 901 TQPXTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KF-PTSKSTKWSHSLTISTSMPSTL 725
T +SS + ++SS+ +S+ T + +S PTS S+ S S + S+S STL
Sbjct: 262 TASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321
Query: 724 STSVKKNSRALLTVTRSVNHVLTTSRS 644
S+S +S + + S + +++S S
Sbjct: 322 SSSSMSSSSSFSSSPTSSSSTISSSSS 348
Score = 26.2 bits (55), Expect = 6.5
Identities = 27/101 (26%), Positives = 48/101 (47%)
Frame = -2
Query: 889 TSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVK 710
+S+I ++SS+ +ST + +S PTS S+ S S + +S + +TS
Sbjct: 304 SSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTISSSSSSPSSSSFSSTTSSS 362
Query: 709 KNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPLTPSSRCS 587
K+S + + S + T+S +L S + P + SS S
Sbjct: 363 KSSSSFSSTVSSSSS--TSSSTLTSSSSSSSRPASSSSHSS 401
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 29.9 bits (64), Expect = 0.53
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 751 ISTSMPSTLSTSVKKNSRALLT--VTRSVNHVLTTSRSL*QSILNLMLPLTPSS 596
++ +PS++++S K NSR+ L+ + ++++L + S S L + LP P S
Sbjct: 249 LAAVLPSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFIPES 302
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 296 VFVYPYEPTPKESEPFKSVVPDNKPFGYP 210
+ VY + P +SE F +VV DN YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.93
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 787 TSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRS-VNHVLTTSRSL*QSILNLMLP 611
TS S S + ST+ S S+S+ +S A ++T S + TTS SL S N
Sbjct: 110 TSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTS 169
Query: 610 LTPSS 596
TP+S
Sbjct: 170 ATPTS 174
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 599 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 474
+++FL P +G + +D W++FY E DW N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 3.7
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -2
Query: 889 TSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVK 710
TS I + ++ S Y+T L +S++ S S+ S+ STS P T+S+S
Sbjct: 205 TSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSS-- 262
Query: 709 KNSRALLTVTRSVNHVLTTSRS 644
+L + T S + LTT+ S
Sbjct: 263 ----SLSSFTPSYSTNLTTTGS 280
Score = 25.8 bits (54), Expect = 8.6
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -2
Query: 919 TKLXPGTQPXTSSI-KELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIST 743
T + P + T++ +NTSS L S+ + +S++ PTS T S +T+S+
Sbjct: 205 TSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVL---PTSIITSTSTPVTVSS 261
Query: 742 SMPSTLSTSVKKNSRALLTVTRSVNHVLTTS 650
S S+ + S N + T + + +++S
Sbjct: 262 SSLSSFTPSYSTNLTTTGSTTTTGSATVSSS 292
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -1
Query: 509 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK--LLDQGKIPTDMFNSSDTMPSRLML 336
F+ VNP ++ TR + ++SLPMA Y L + + + P +
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFTLTGDDNLFPEGGLR 317
Query: 335 PKGTYDG 315
P T DG
Sbjct: 318 PANTIDG 324
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = -1
Query: 515 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 414
DW + K+ P ++T D FF + P +
Sbjct: 82 DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +3
Query: 294 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 428
+K L G R+ RRH V G+ ++RN S+ + L+D +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 208 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 387
+G + L + + N +++ G+Y N NS N + S SL+G+ S LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 656 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 534
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
Frame = -1
Query: 683 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 579
Y+V++PRLN +P +T ++++ +A+N V VK+ FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 257 EPFKSVVPDNKPFGYPFDRPVLP 189
E KS VPD P G+P D P+ P
Sbjct: 19 EGLKSSVPDASPKGHP-DSPIFP 40
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 8.6
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = -2
Query: 832 HTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTT 653
HT LV FP T +++ T + + TLS+ + +N+ T S + +
Sbjct: 514 HTVNDDTPPLVVYFPNYPWTMYANVTTYTVQLEDTLSSGMIENAAVAATQNNSDSFAVCV 573
Query: 652 SRSL*QSILNLMLPLTPSSRCS 587
+ +L Q L TPS S
Sbjct: 574 ACALVQRSLERKNMSTPSQCAS 595
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 394 PWSKSL*ISAIGKE-----SSLKNAKSVDERVI*DWPGLTFCTNQSSS*KFIQLSSRLKG 558
PWS++ S G +S+K+A + + I + L N + KF KG
Sbjct: 5 PWSRNFLCSCRGFSVCTPYASIKSASELALKNISELQALQKIQNHTEKLKFFSSKLHNKG 64
Query: 559 KPFSSYLG 582
+PF+ LG
Sbjct: 65 EPFTLQLG 72
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 8.6
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = -2
Query: 832 HTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTT 653
HT L+ FP +S+ T + SM TLS+ + +N+ T S + +
Sbjct: 486 HTVDNNTPPLLVYFPNYPWVYYSNISTFTMSMNDTLSSGILENAALSATQNNSDSFAVCL 545
Query: 652 SRSL*QSILNLMLPLTPSSRCS 587
+ ++ Q L TP S+CS
Sbjct: 546 ACAMIQRSLERKNMSTP-SQCS 566
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = -2
Query: 862 TSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTV 683
TSS+L++ + K+L++ FP T+ + + + S+S+PS S+S + ++
Sbjct: 80 TSSSLSTRKRWRQKRLWSFK--NFPFRPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHT 137
Query: 682 TRSVNH 665
T SV++
Sbjct: 138 TSSVSN 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,123
Number of Sequences: 5004
Number of extensions: 77502
Number of successful extensions: 289
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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