Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16g01
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 104 9e-24
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 97 2e-21
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 75 1e-14
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 71 1e-13
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 70 3e-13
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 48 1e-06
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.22
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 30 0.29
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.39
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 0.39
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.52
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 27 2.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.1
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.1
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 26 3.6
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 3.6
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 3.6
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 3.6
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 8.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 8.4
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 8.4
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 8.4
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 104 bits (250), Expect = 9e-24
Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Frame = -3
Query: 596 WGFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEI--AANHAKAAYFNTFGGNPMASTVGK 423
+ FE HG+ PDI+T++K +G G LAAV+T++EI ++ T +P+ + +G
Sbjct: 264 FSFEHHGIVPDILTLSKSLGAGTALAAVITSEEIEKVCYDNGFVFYTTHASDPLPAAIGS 323
Query: 422 AVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVEL---VEPGTKT 252
VL+V++ + L + +K+ GE L+ L+ +HP+I DVRG GL+ G+E+ +P +
Sbjct: 324 TVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIASCTDPSKPS 383
Query: 251 PLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 87
+ + D + N ++ G VFRI PP+ +T +++ I I + A+
Sbjct: 384 DFLGTVIGDKCLELGMNCNIVHLRG-IGGVFRIAPPLTVTDEEIHKAIEIFDSAL 437
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 97.1 bits (231), Expect = 2e-21
Identities = 58/168 (34%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Frame = -3
Query: 587 ETHGVKPDIVTMAKGIGNG-FPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLE 411
E VKPD+V + K I G +P++AV++++EI N + +T+GGNP+ + V A LE
Sbjct: 262 EHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGGNPLGAAVSIAALE 321
Query: 410 VIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKV 231
V++EE L + + V+GE F L++ + P++ VRG+GL+ V + E +KT T+
Sbjct: 322 VVKEEKLTERAAVLGEKFRTALIECKS--PIVQKVRGRGLLNAVVIDE--SKTNGRTAW- 376
Query: 230 NDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 87
D+ ++ GVL N+ R PP+ IT++D+ GI +I ++
Sbjct: 377 -DLCLIMRSRGVLAK--PTHGNIIRFSPPLVITEEDLMKGIEVIKKSL 421
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 74.5 bits (175), Expect = 1e-14
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Frame = -3
Query: 569 PDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGL 390
PDI+T+AK + NG P+ A + + +IAA + +TFGGNP+A VG + + +
Sbjct: 287 PDIITVAKPLANGLPIGATIVSSKIAAEIHPGEHGSTFGGNPVACRVGTFCVNELGSSKI 346
Query: 389 QQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHEN 213
QN + + + D ++P +I G+GL++G++ EP K E
Sbjct: 347 LQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGLQFTEPPAK----------FIEL 396
Query: 212 IKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIK 84
+ G+L+ GG NN R+ P + + + + G+ I+ +K
Sbjct: 397 ARQQGLLLLPGG--NNNTRVLPSLNVKDEVIAKGLDIMESTLK 437
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 70.9 bits (166), Expect = 1e-13
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Frame = -3
Query: 596 WGFETHGVKPDIVTMAKGIGNGF-PLAAVVTTKEI---AANHAKAAYFNT--FGGNPMAS 435
W E + PD + AKG G P A + T+E+ A N + A+ +T + N +
Sbjct: 289 WACEYENIIPDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQENTLGL 348
Query: 434 TVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVEL----- 273
G A ++ I + L + +G +L LQ + P V+ DVRG+G+++G+E
Sbjct: 349 AAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIPE 408
Query: 272 -VEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIIN 96
V+ T VND+ + V + +VFR PP+ I + D+D G+S +
Sbjct: 409 SVQEEFGEYYATPIVNDLADTYH---VQVYCSLNNPSVFRFLPPLTIPEADLDEGLSAVE 465
Query: 95 DAIKK 81
A+ K
Sbjct: 466 SAVAK 470
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 69.7 bits (163), Expect = 3e-13
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Frame = -3
Query: 590 FETHGVKPDIVTMAKGIGNGF-PLAAVVTTKEIA----ANHAKAAYFNTFGGNPMASTVG 426
+E GV PDI ++AK +G G+ P++ + I A A F T+ +P+A +
Sbjct: 271 WEQEGVTPDIQSIAKCLGGGYQPISGALVGHRIMNVFEQKDAAMAGFFTYQAHPIACSAA 330
Query: 425 KAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELV-EPGTKTP 249
AV ++ + L + + +G+Y +L + HP +G++RG+GL G+E+V + TK
Sbjct: 331 LAVQTILRRDHLVERAAEMGKYLSEKLHETFDSHPNVGNIRGRGLFWGLEIVKDKATKEC 390
Query: 248 LTTS-KVNDIHENIK-DNGVLIARG-----GRFNNVFRIKPPMCITKQDVDFGISIINDA 90
KV + I ++GV + G G + + PP IT++ +D + ++
Sbjct: 391 FPPEYKVGSLANKIGCEHGVFVYPGMGTIDGTRGDHVLLAPPYIITREQIDELVEALSKT 450
Query: 89 IKKVV 75
I V
Sbjct: 451 ITSTV 455
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 47.6 bits (108), Expect = 1e-06
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -3
Query: 569 PDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGL 390
PD+VT +K AA + ++A +FNT+ G+P + + +L+ I+++ L
Sbjct: 326 PDMVTFSKKFQ-----AAGIFYHDLALRPHAYQHFNTWMGDPFRAVQSRYILQEIQDKDL 380
Query: 389 QQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQG 294
N K VG++ L +L ++HP I ++RG+G
Sbjct: 381 LNNVKSVGDFLYAGLEELARKHPGKINNLRGKG 413
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 139 HIGGFILNT--LLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTS 312
H G F++N L P T ++ T EV++GV+ S +P+ PLT
Sbjct: 105 HYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTI 164
Query: 313 PITGC 327
GC
Sbjct: 165 VCDGC 169
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.29
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 MHIGGFILNTLLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRP-CPLTS 312
MHI +LN LK PP ++S S I S S T V + PG + S P+ P P++
Sbjct: 195 MHIINLLLNGSLKSPPVSISP--SFIASAAS-TSSVSAPSQYPGLSRSPPVQAPNIPVSD 251
Query: 313 P 315
P
Sbjct: 252 P 252
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.39
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +3
Query: 81 FFDRIIDDRNAEVDV-----LFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 245
F DR++D+ NAEV + + W Y+ I+ + + +D L++ GS
Sbjct: 699 FTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758
Query: 246 QRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQLPDEVFADYLTV 383
+R L S +D++ + + N +++ + ++ + +Y TV
Sbjct: 759 RRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTV 804
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 0.39
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = +3
Query: 189 DEHSVVFDIL-MDIIN------FGSGQR--CLSSGFNKLHSDHEALSPDIANHWVLLLK- 338
DEHS+ D++ +DI + FG G C G N L S N+ ++LL
Sbjct: 347 DEHSISRDLVSVDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPRNYEIVLLDH 406
Query: 339 --IHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKVGSLRVIG 491
+P E+ DY + L FN F + VS E+ + + + G
Sbjct: 407 GLYRDIPHELQVDYANMWLNIINFNEKNLKFYAKKVANVSDENFPIFATAITG 459
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 29.1 bits (62), Expect = 0.52
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 177 STTSDEHSVVFD---ILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLL 335
S S+E SV+FD +L I++ S +S F +HS HE PDIA + +L
Sbjct: 776 SPDSEEGSVLFDDGELLCGILDKSSFG---ASAFGLVHSVHELYGPDIAGRLLSVL 828
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -1
Query: 232 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 53
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 52 LARLKVFIFV 23
+ + V
Sbjct: 288 AISFSICVIV 297
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -3
Query: 533 GFPLAAV-VTTKEIAA---NHAKAAYFNTFGGNPMASTVGKAVLEVIEEE 396
GFP+ V T+ I + N A+ A + G P+ S++GKA+LE+ EE
Sbjct: 436 GFPVGFVNAVTRHIPSPRENAARKASQSYIG--PINSSIGKAILEMSREE 483
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -1
Query: 232 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 53
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 52 LARLKVFIFV 23
+ + V
Sbjct: 288 AISFSICVIV 297
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 575 VKPDIVTMAKGIGNGFPLAA 516
+KPD+ T+ K +G G P A
Sbjct: 261 LKPDLTTLGKYLGGGLPFGA 280
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 177 STTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQL 350
S T+ +HS + + N G++ +SS + SD PD H L+ K +QL
Sbjct: 121 SVTAHDHSDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQL 178
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 117 VDVLFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDII 230
V +LF D W F++ + +ST++ E + D + ++
Sbjct: 195 VGILFEDDLWYFFNTLYMLSSTSAIEFAYFLDSIFTVV 232
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 250 GVLVPGSTSSTPIM-----RPCPLTSPITGCCF*RSINCLMKYSPTTLLFCCSPSSSI 408
G+L+ GST ++ I+ +P L +TG R I C+ + T + + C SSI
Sbjct: 145 GLLLSGSTDASLIVWDVSSQPSRLLYKLTGHS--RGIECITRQPNTDIFWTCGSESSI 200
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 320 VIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNG-VLIARGGRFNNVFRIKPP 144
V+ + G+ + I E +K P T + + + + N VLIA FNN+F+ P
Sbjct: 659 VVKNDEGEPIEIIAEYDASSSKKPKTF--IQWVSRDKESNSPVLIAETRLFNNLFKCDNP 716
Query: 143 MCITKQDV 120
+ +Q++
Sbjct: 717 AALKEQEL 724
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 226 SLTLEVVSGVLVPGSTSSTPIMRPCPLTSPI 318
S T VS P STS PI P T P+
Sbjct: 631 SFTSYTVSATATPTSTSHIPIPTVLPPTQPV 661
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 202 LSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTSPITGCC 330
LSL IS+ + S VL GS + + + LTSPI C
Sbjct: 151 LSLELMRISIWIGNYSHVLAFGSRAKSTVSAAMELTSPIYAYC 193
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -3
Query: 434 TVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDV 306
TVG + + + E G++ + V G+Y +R L+D + +P + ++
Sbjct: 10 TVGTYLAQRLVEIGIKNHFVVPGDYNLR-LLDFLEYYPGLSEI 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,256
Number of Sequences: 5004
Number of extensions: 50601
Number of successful extensions: 182
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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