Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16g01
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.0  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   6.9  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   6.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 416 LEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGL 291
           L + ++  +QQ      +Y ++Q + LQ  +P  G   G+GL
Sbjct: 179 LALQQQRLIQQLQITQSQYLLQQGLGLQGHNPSSGLQPGEGL 220


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 156 SEYIIKASTTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEAL 299
           + +I  AS T  E++V   +  D+I+   G R ++        D+E +
Sbjct: 424 ARHIPHASVTDSENTVPRYLSPDVISALKGVRFIAQHIKNADKDNEVI 471


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 296 GLMIGVELVEPGTKTPLTTSKVNDIHENIK 207
           G  + VE +E GT+         D+HE I+
Sbjct: 68  GNTLNVEKLESGTRELTPDDFTEDVHEIIE 97


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 296 GLMIGVELVEPGTKTPLTTSKVNDIHENIK 207
           G  + VE +E GT+         D+HE I+
Sbjct: 68  GNTLNVEKLESGTRELTPDDFTEDVHEIIE 97


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 2   T*NNGILYKNKNFQTGKDFYYTLS 73
           T +N   Y N N+   K  YY ++
Sbjct: 89  TIHNNNNYNNNNYNNYKKLYYNIN 112


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 11  NGILYKNKNFQTGKDFYYTLS 73
           N   Y N N+   K  YY ++
Sbjct: 102 NNYNYNNNNYNNYKKLYYNIN 122


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 SGQRCLSSGFNKLHSDHEAL 299
           SGQR +SSGF     +++ L
Sbjct: 35  SGQRSVSSGFRSSLRNYKTL 54


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 542 IGNGFPLAAVVTTKEI 495
           +GN   +AAV+TT+ +
Sbjct: 53  VGNTLVIAAVITTRRL 68


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 8   NNGILYKNKNFQTGKDFYYTL 70
           NN   Y N N+   K  YY +
Sbjct: 336 NNYNNYNNNNYNNYKKLYYNI 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,260
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)